Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Rotylenchulus_20reniformis_20[genbank_20GCA_5F001026735.1_202015-06- 12] 100,525 sequences; 313,575,666 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq51152 107 2e-18 seq3766 102 6e-17 seq482 102 6e-17 seq2518 98.7 8e-16 seq5492 89.7 4e-13 seq12421 86.0 5e-12 >seq51152 Length=820 Score = 107 bits (118), Expect = 2e-18 Identities = 136/187 (73%), Gaps = 0/187 (0%) Strand=Plus/Minus Query 61435 AAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTG 61494 || || |||||||| || |||||| ||| | ||||||||| || ||| ||||| Sbjct 212 AAGGCAGATTGGGCATTACGTTGGATTTCCAATCATGAGGCTACATTCGGAGAAAGATTG 153 Query 61495 CTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGG 61554 | ||||| |||| |||||| || | || ||| || ||||| ||||| || ||| Sbjct 152 GTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGGCAGTTTTGCAGCAATTTTCTGG 93 Query 61555 TTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGAC 61614 ||||||||||| || || ||||| ||||| || ||||||||| | || || ||||| Sbjct 92 TTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAGCAATGAACTAATCTCGCGCGAT 33 Query 61615 GAGGGCA 61621 |||| || Sbjct 32 GAGGTCA 26 >seq3766 Length=16830 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Plus Query 61473 GGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532 ||||||||| || ||| ||||| | ||||| |||| |||||| || | || ||| || Sbjct 1 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 60 Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592 ||||| ||||| || |||||||||||||| || || ||||| ||||| || ||| Sbjct 61 CAGTTTTGCAGCAATTTTCTGGTTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAG 120 Query 61593 CAATGAGTTGATATCACGCGACGAGGGCA 61621 |||||| | || || ||||| |||| || Sbjct 121 CAATGAACTAATCTCGCGCGATGAGGTCA 149 >seq482 Length=68918 Score = 102 bits (112), Expect = 6e-17 Identities = 112/149 (75%), Gaps = 0/149 (0%) Strand=Plus/Minus Query 61473 GGCTACATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGG 61532 ||||||||| || ||| ||||| | ||||| |||| |||||| || | || ||| || Sbjct 68918 GGCTACATTCGGAGAAAGATTGGTCGCATTCGCGGCGGTCGAAGGAATTTTCTTCTCGGG 68859 Query 61533 ATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAG 61592 ||||| ||||| || |||||||||||||| || || ||||| ||||| || ||| Sbjct 68858 CAGTTTTGCAGCAATTTTCTGGTTGAAGAAACGCGGTCTAATGCCGGGTCTCACACACAG 68799 Query 61593 CAATGAGTTGATATCACGCGACGAGGGCA 61621 |||||| | || || ||||| |||| || Sbjct 68798 CAATGAACTAATCTCGCGCGATGAGGTCA 68770 >seq2518 Length=16751 Score = 98.7 bits (108), Expect = 8e-16 Identities = 104/137 (76%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || |||||| ||||||||||| || || | | ||||||||||| ||| || || || Sbjct 9560 GATTTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTGGATGTGTATGGCTCGAA 9619 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 ||| || ||||||| || |||||||| || || || |||||||| || ||||||| || Sbjct 9620 GGACTCGTTGTTGCCGAGGATTTGGGCCGTTGACGCGGTTGGCATCGGCGCGACCAGCAG 9679 Query 65548 TGAGTTTCGCAATCCGT 65564 ||| |||| ||||| Sbjct 9680 ACTGTTGCGCACTCCGT 9696 Score = 96.9 bits (106), Expect = 3e-15 Identities = 116/158 (73%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 ||||||| || || | |||||| || || ||||| || | | ||||||| || Sbjct 10555 AGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACTCGATGATC 10614 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 ||||||||||| || ||| ||||| || | |||||| || || |||||| ||| Sbjct 10615 TCGGTGCACAGGTTGGAGCACTTGATGGTCCCGAGATTCTGCTGGTTCGACTTGCGGTTG 10674 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || || |||||||||| ||||||||| |||||||| || Sbjct 10675 CACGCGTCCTTGTACACCATGTACGGGGTGCCGGTTTC 10712 >seq5492 Length=8422 Score = 89.7 bits (98), Expect = 4e-13 Identities = 100/134 (75%), Gaps = 0/134 (0%) Strand=Plus/Minus Query 65431 TTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGA 65490 |||||| ||||||||||| || || | | |||||||| || ||| || || ||||| Sbjct 6734 TTGGAAGTCGCCGGACAGCACGCGTCTGCTGTAGATGTTTGATGTGTATGGCTCGAAGGA 6675 Query 65491 TTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAATGA 65550 || ||||||| || |||||||| || || || || ||||| || ||||||| || Sbjct 6674 CTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGCGCGACCAGCAGACT 6615 Query 65551 GTTTCGCAATCCGT 65564 ||| |||| ||||| Sbjct 6614 GTTGCGCACTCCGT 6601 >seq12421 Length=2797 Score = 86.0 bits (94), Expect = 5e-12 Identities = 101/137 (74%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 65428 GACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAA 65487 || |||||| ||||| ||||| || || | | ||||||||||| ||| || ||||| Sbjct 129 GATTTGGAAGTCGCCAGACAGCACGCGTCTGCTGTAGATGTTGGATGTGTATGGCTCAAA 188 Query 65488 GGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGACCAACAA 65547 ||| || ||||||| || |||||||| || || || || ||||| || || |||| || Sbjct 189 GGACTCGTTGTTGCCGAGGATTTGGGCCGTGGACGCGGTCGGCATCGGCGCAACCAGCAG 248 Query 65548 TGAGTTTCGCAATCCGT 65564 ||| |||| |||| Sbjct 249 ACTGTTGCGCACCCCGT 265 Score = 82.4 bits (90), Expect = 6e-11 Identities = 113/158 (72%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 ||||||| || || | |||||| || || ||||| || | | ||||||| || Sbjct 1195 AGGGCAATGGAGGCCAAGTTGCACACTGCGGTCTCGGTGGGCGAAGAGTACTCGATGATC 1254 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 || |||||||| || ||| ||||| || | ||||| || || |||||| ||| Sbjct 1255 TCAGTGCACAGGTTGGAGCACTTGATGGTCCCGAGGTTCTGCTGGTTCGACTTGCGGTTG 1314 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTC 66162 || || |||||||||| ||| || || ||||||||||| Sbjct 1315 CACGCGTCCTTGTACACCATATATGGGGTGCCGGTCTC 1352 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397080920186000