Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01000140.1 Length=336 Score E Sequences producing significant alignments: (Bits) Value seq1343 205 2e-50 >seq1343 Length=5826 Score = 205 bits (226), Expect = 2e-50 Identities = 250/337 (74%), Gaps = 12/337 (4%) Strand=Plus/Plus Query 4 CCCGAGCAGGGGGGTGAAATAGACCCTGAACCCGCGCGCCTACAAGCGGTCGGAGCC--- 60 ||||| ||||| |||||| ||| |||||| ||| |||||||| | || |||||| Sbjct 2855 CCCGACAAGGGGAGTGAAAGAGAACCTGAAACCGGTTGCCTACAAACAGTTGGAGCCCAA 2914 Query 61 GAGTGATTC--GGTGACGGCGTGCCTTTTGCATAATGAGCCTACGAGTTAGTCGTCACCA 118 || | ||| |||||| |||| ||||||| |||||| | | ||| |||||| | || | Sbjct 2915 GATTAGTTCTGGGTGACAGCGTACCTTTTGTATAATGGGTCAGCGACTTAGTC-TGACGA 2973 Query 119 GCGAGGTTAAGGGCTTCAGGCCCGT-TAGCCGAAGTGAAAGCGAGCCTTAACAGGGCGAC 177 || || ||||| | || || ||| || || ||||||||| || ||||||||| Sbjct 2974 GCAAGCTTAAG-----CCGGTAGGTGTAGGCGTAGCGAAAGCGAGTCTGAACAGGGCGTT 3028 Query 178 GAGTTGGTGGCGCTAGACGCGAAACCTTGTGATCTACCCACGAGCAGGTTGAAGTCGCGG 237 |||| || | ||||| ||||||| |||||||| ||| ||||||||||||| || Sbjct 3029 CAGTTCGTCGGATTAGACCCGAAACCGAGTGATCTAGCCATGAGCAGGTTGAAGGTTGGG 3088 Query 238 TAACGCGTGATGGAGGACCGAACCGGTAAACGTTGAAAAGTTTTCGGATGACTCGCGGGT 297 |||| | |||||||||||||| || |||| || || |||||||| | || | Sbjct 3089 TAACACCAACTGGAGGACCGAACCCATATCTGTTGCAATAGATTGGGATGACTTGTGGCT 3148 Query 298 AGGGGTGAAAGGCCAATCAAACTGGGAAATAGCTCGT 334 ||||||||||||||||||||||| ||| |||||| || Sbjct 3149 AGGGGTGAAAGGCCAATCAAACTCGGAGATAGCTGGT 3185 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 972784804864