Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq1343 168 9e-40 >seq1343 Length=5826 Score = 168 bits (186), Expect = 9e-40 Identities = 186/248 (75%), Gaps = 11/248 (4%) Strand=Plus/Minus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| ||||||| ||||||||||||||||| || ||||| ||| ||| || ||||||| Sbjct 4110 CTTAACCTTCCAGCACCGGGCAGGCGTCAGACCCTATACGTCGTCTT-GCGACTTCGCAG 4052 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCGACCACCACCAGCTCA 120 | ||||||||||| ||||||||||||| ||| || ||| ||| ||| || | ||| Sbjct 4051 AGCCCTGTGTTTTTGGTAAACAGTCGCTACCCCCTGGTCTGTGCCACCCTCATCTGCT-- 3994 Query 121 ACACGTCGTTCACCAGCAGTGGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAA 180 | | | | || || | ||||| ||||||||||| | || |||||||| Sbjct 3993 --------TGCGCAAACAAGGGTCACGCTTCTTCCGAAGTTACGCGTGCAATTTGCCGAG 3942 Query 181 TTCCTTAACCACAGTTCACCCGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGT 240 |||||| | | |||||| | | | |||||| |||| ||||||| | ||||| |||||||| Sbjct 3941 TTCCTTCAACGCAGTTCTCTCAAGCGCCTTGGTATACTCTACCAGTCCACCAGTGTCGGT 3882 Query 241 TTACGGTA 248 ||| |||| Sbjct 3881 TTAGGGTA 3874 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694389492426