Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1004 122 1e-25 seq893 107 3e-21 seq1437 105 1e-20 seq1187 102 1e-19 seq1397 98.7 2e-18 seq645 93.3 7e-17 seq1097 86.0 1e-14 seq1306 84.2 3e-14 seq1562 80.6 4e-13 seq1201 77.0 5e-12 seq1282 73.4 6e-11 >seq1004 Length=642680 Score = 122 bits (134), Expect = 1e-25 Identities = 97/114 (85%), Gaps = 2/114 (2%) Strand=Plus/Plus Query 142 CTATTTAGCAGGTTAAGGTCTCGTTCGTTA-TCGGAATTAACCAGACAAATCACTCCACC 200 ||||||| || ||| |||||| |||||| ||||||| ||||||||||||| |||||| Sbjct 549760 CTATTTAATAGATTAGAGTCTCGCTCGTTAATCGGAATAAACCAGACAAATCGATCCACC 549819 Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 |||||||||| | |||||||||||| ||| |||||||||| ||||| |||||| Sbjct 549820 AACTAAGAAC-GTCATGCACCACCATCCACCGAATCAAGAAGGAGCTTTCAATC 549872 >seq893 Length=1694367 Score = 107 bits (118), Expect = 3e-21 Identities = 67/72 (93%), Gaps = 0/72 (0%) Strand=Plus/Minus Query 187 CAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGC 246 ||||||| ||||||||||||||||||||||||||||||| ||| ||||||||||||||| Sbjct 943389 CAAATCAATCCACCAACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGC 943330 Query 247 TATCAATCTGTC 258 | |||||||||| Sbjct 943329 TTTCAATCTGTC 943318 >seq1437 Length=310419 Score = 105 bits (116), Expect = 1e-20 Identities = 67/73 (92%), Gaps = 0/73 (0%) Strand=Plus/Plus Query 186 ACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAG 245 |||||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||| Sbjct 130329 ACAAATCAATCCACCTACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAG 130388 Query 246 CTATCAATCTGTC 258 || |||||||||| Sbjct 130389 CTTTCAATCTGTC 130401 >seq1187 Length=62743 Score = 102 bits (112), Expect = 1e-19 Identities = 65/71 (92%), Gaps = 0/71 (0%) Strand=Plus/Minus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||| |||||| |||||||||||||||||||||||| ||| |||||||||||||||| Sbjct 52033 AAATCAATCCACCGACTAAGAACGGCCATGCACCACCATCCACCGAATCAAGAAAGAGCT 51974 Query 248 ATCAATCTGTC 258 |||||||||| Sbjct 51973 TTCAATCTGTC 51963 >seq1397 Length=300834 Score = 98.7 bits (108), Expect = 2e-18 Identities = 69/79 (87%), Gaps = 0/79 (0%) Strand=Plus/Plus Query 180 AACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAG 239 |||||||||||||| ||||||||||||||||||||| | | || || ||| |||||||| Sbjct 269141 AACCAGACAAATCAATCCACCAACTAAGAACGGCCACGTATCATCATCCACCGAATCAAG 269200 Query 240 AAAGAGCTATCAATCTGTC 258 |||||||| | |||||||| Sbjct 269201 AAAGAGCTTTTAATCTGTC 269219 >seq645 Length=267057 Score = 93.3 bits (102), Expect = 7e-17 Identities = 59/64 (92%), Gaps = 0/64 (0%) Strand=Plus/Plus Query 195 TCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATC 254 ||||||||||||||||||||||||||||||| ||| ||||| |||||||||| |||||| Sbjct 103830 TCCACCAACTAAGAACGGCCATGCACCACCATCCACCGAATCGAGAAAGAGCTTTCAATC 103889 Query 255 TGTC 258 |||| Sbjct 103890 TGTC 103893 >seq1097 Length=130645 Score = 86.0 bits (94), Expect = 1e-14 Identities = 53/57 (93%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 16 TCAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 |||||||||||||||||| |||| ||||||| |||||||||| |||||||||||||| Sbjct 130249 TCAGTGTAGCGCGCGTGCAGCCCCGAACATCCAAGGGCATCATAGACCTGTTATTGC 130193 >seq1306 Length=4197 Score = 84.2 bits (92), Expect = 3e-14 Identities = 67/81 (83%), Gaps = 0/81 (0%) Strand=Plus/Minus Query 176 AATTAACCAGACAAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAAT 235 ||| || ||| |||| | |||||||||||||||||||||||||||| || ||| ||| Sbjct 2211 AATAAAGCAGGAAAATGAATCCACCAACTAAGAACGGCCATGCACCATCATCCACCAAAT 2152 Query 236 CAAGAAAGAGCTATCAATCTG 256 ||||||| ||| |||||||| Sbjct 2151 CAAGAAAACGCTTTCAATCTG 2131 >seq1562 Length=386983 Score = 80.6 bits (88), Expect = 4e-13 Identities = 52/57 (91%), Gaps = 0/57 (0%) Strand=Plus/Minus Query 202 ACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||||||| ||| ||||||||||||||| |||||||||| Sbjct 233663 ACTAAGAACGGCCATGCACCACCATCCACCAAATCAAGAAAGAGCTTTCAATCTGTC 233607 >seq1201 Length=196354 Score = 77.0 bits (84), Expect = 5e-12 Identities = 63/77 (82%), Gaps = 0/77 (0%) Strand=Plus/Plus Query 188 AAATCACTCCACCAACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCT 247 |||||| ||| |||||||||||| ||||||| ||||| ||| |||||| |||||||| Sbjct 132601 AAATCAACCCATCAACTAAGAACGTCCATGCAACACCATCCACCAAATCAACAAAGAGCT 132660 Query 248 ATCAATCTGTCCTCCCT 264 | |||||||| |||| Sbjct 132661 TTTAATCTGTCAACCCT 132677 >seq1282 Length=265974 Score = 73.4 bits (80), Expect = 6e-11 Identities = 49/55 (89%), Gaps = 0/55 (0%) Strand=Plus/Plus Query 204 TAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||||| |||| ||| |||||||||||||||| |||||||||| Sbjct 244554 TAAGAACGGCCTTGCACGACCATCCACCGAATCAAGAAAGAGCTTTCAATCTGTC 244608 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796787942922