Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq1316 352 5e-95 seq1173 264 2e-68 seq1405 248 1e-63 seq1555 194 3e-47 seq562 154 3e-35 seq997 123 4e-26 seq1420 109 9e-22 seq1540 100 5e-19 seq1150 87.8 3e-15 >seq1316 Length=19722 Score = 352 bits (390), Expect = 5e-95 Identities = 239/266 (90%), Gaps = 4/266 (2%) Strand=Plus/Minus Query 30 GTCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCT 89 |||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||| Sbjct 11487 GTCAACAGTAGGGTAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCT 11428 Query 90 ATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG 149 |||||||||||||||||||||||||| |||||||||||| |||||||||||||||| Sbjct 11427 ATTAGTGGGTGAACAATCCAACGCTTGGAGAATTCTGCTTCTCAATGATAGGAAGAGCCG 11368 Query 150 ACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATC 209 |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| Sbjct 11367 ACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATC 11308 Query 210 CCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGAT 267 |||||||||||||||||| ||||||| | ||| |||| | | | ||||||||| Sbjct 11307 CCTGTGGTAACTTTTCTGACACCTCTTACTGAAAACTTTTCAA--ATCAACAGGATCGAT 11250 Query 268 AGGCCACACTTTCATGGTTTGTATTC 293 ||||||| |||||| ||| ||||||| Sbjct 11249 AGGCCACGCTTTCACGGTCTGTATTC 11224 >seq1173 Length=22282 Score = 264 bits (292), Expect = 2e-68 Identities = 195/226 (86%), Gaps = 1/226 (0%) Strand=Plus/Plus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 |||| || |||||||||||||||||||||||||||| ||||||||||| |||||||| Sbjct 3605 TCTATTCCTAGCTCACGTTCCCTATTAGTGGGTGAACGATCCAACGCTTGGAGAATTCTG 3664 Query 127 CTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGC 186 |||| |||||||||||||||||||||||||||||||||||||||||||||||| |||| Sbjct 3665 CTTCCCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGGACGC 3724 Query 187 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATT 246 ||||||||||||||||||||||||||||||| ||||||||| ||||||| | | || || Sbjct 3725 TTGGCTGCCACAAGCCAGTTATCCCTGTGGTGACTTTTCTGCCACCTCTTACTTAAACTT 3784 Query 247 TCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATT 292 || | | |||||| ||| |||| || |||| | ||| |||||| Sbjct 3785 TCCA-AATCAAAAGGACCGAAAGGCAACGCTTTTACGGTCTGTATT 3829 >seq1405 Length=143159 Score = 248 bits (274), Expect = 1e-63 Identities = 196/232 (84%), Gaps = 5/232 (2%) Strand=Plus/Minus Query 62 GACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAA 121 |||||||||||||||||||||||||| | ||||| ||||||||||||||||||| ||| Sbjct 79949 GACGGTCTAAACCCAGCTCACGTTCCATTTTAGTAGGTGAACAATCCAACGCTTGGAGAA 79890 Query 122 TTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATG 181 ||||| || |||||||||||||| ||||||||||||| |||||||||| |||| || Sbjct 79889 TTCTGGTTTTCAATGATAGGAAGAGCGGACATCGAAGGATAAAAAAGCAACATCGCCTTG 79830 Query 182 AACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTC 241 | |||||||||||||||||||| ||||||||||||||||| |||| ||||||| | Sbjct 79829 GAAGCTTGGCTGCCACAAGCCAGATATCCCTGTGGTAACTTATCTGACACCTCT-TATTG 79771 Query 242 AAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTAT 291 ||| |||| | | |||||||||||||||||| |||||||||| ||||| Sbjct 79770 AAACTTTTCAA--ATCAAAAGGATCGATAGGCCACTCTTTCATGGTCTGTAT 79721 >seq1555 Length=641369 Score = 194 bits (214), Expect = 3e-47 Identities = 140/162 (86%), Gaps = 0/162 (0%) Strand=Plus/Minus Query 40 GGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGT 99 ||| ||||||||| |||||| ||| |||||||||||| ||||||||||||||||||||| Sbjct 84952 GGGGAAAACTAACTCGTCTCACGACAGTCTAAACCCAGTTCACGTTCCCTATTAGTGGGT 84893 Query 100 GAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGG 159 ||||||||| |||| | |||||||||| ||||||| |||||||||||||||||| Sbjct 84892 GAACAATCCCACGCCTGGAGAATTCTGCTCTTCAATGATAGAAAGAGCCGACATCGAAGG 84833 Query 160 ATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGC 201 ||||||| ||||||||||||| || | |||||| |||||||| Sbjct 84832 ATCAAAATGCAACGTCGCTATTAATGTTTGGCTACCACAAGC 84791 >seq562 Length=364325 Score = 154 bits (170), Expect = 3e-35 Identities = 116/136 (85%), Gaps = 9/136 (7%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||| ||||||||||||| ||||||||||| ||||||||||||||||||||||||||||| Sbjct 234060 TAAACCTAACCTGTCTCACGACGGTCTAAATCCAGCTCACGTTCCCTATTAGTGGGTGAA 234119 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCG---ACATCGAAGG 159 ||||||||||||| |||||||||| |||||||||||||||| ||||||| Sbjct 234120 CAATCCAACGCTTGGAAAATTCTGCTTTCCAATGATAGGAAGAGCCGCCAACATCGA--- 234176 Query 160 ATCAAAAAGCAACGTC 175 ||||||||||||| Sbjct 234177 ---AAAAAGCAACGTC 234189 Score = 73.4 bits (80), Expect = 7e-11 Identities = 52/59 (88%), Gaps = 3/59 (5%) Strand=Plus/Plus Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCG---ACATCGAAGGATCAAAAAGCAACGTC 175 ||||||||||| |||||||||||||||| |||||||||||| ||||||||||||| Sbjct 234444 AATTCTGCTTCTCAATGATAGGAAGAGCCGCCAACATCGAAGGATAAAAAAGCAACGTC 234502 >seq997 Length=328822 Score = 123 bits (136), Expect = 4e-26 Identities = 104/126 (83%), Gaps = 4/126 (3%) Strand=Plus/Plus Query 170 AACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGC 229 ||||| |||||| |||||||||||||||||||||||||| ||||| |||||||||||| | Sbjct 8778 AACGTGGCTATGGACGCTTGGCTGCCACAAGCCAGTTATTCCTGTTGTAACTTTTCTGAC 8837 Query 230 ACCTCTAGCCTCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTT 287 |||||| | ||| |||| | | | |||||||||||||||| |||||| ||| | Sbjct 8838 ACCTCTTACTGAAAACTTTTCAA--ATCAACAGGATCGATAGGCCACGCTTTCACGGTCT 8895 Query 288 GTATTC 293 |||||| Sbjct 8896 GTATTC 8901 >seq1420 Length=122554 Score = 109 bits (120), Expect = 9e-22 Identities = 95/116 (82%), Gaps = 4/116 (3%) Strand=Plus/Plus Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || |||||||||||||||||||||||||| ||||||||||||||||| ||||||| | Sbjct 37638 TGGACGCTTGGCTGCCACAAGCCAGTTATTTCTGTGGTAACTTTTCTGACACCTCTTACT 37697 Query 240 TCAAA--TTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 ||| |||| | | || ||||||||||||||| |||||| ||| ||||||| Sbjct 37698 GAAAACTTTTCAA--ATCAAATGGATCGATAGGCCACGCTTTCACGGTCTGTATTC 37751 >seq1540 Length=563204 Score = 100 bits (110), Expect = 5e-19 Identities = 85/102 (83%), Gaps = 6/102 (6%) Strand=Plus/Plus Query 179 ATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 ||| ||||||||||||||||||||||||||||||||||||||||||||| |||||| | Sbjct 503994 ATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGACACCTC-ATA 504052 Query 239 CTCAAA---TTTCGAGGGACTAAAGGATCGATAGGCCACACT 277 || ||| |||| | | ||||||||||||||| || || Sbjct 504053 CTGAAAACTTTTCAA--ATCAAAAGGATCGATAGGCTACGCT 504092 >seq1150 Length=1226963 Score = 87.8 bits (96), Expect = 3e-15 Identities = 65/76 (86%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 67 TCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTG 126 ||||| ||||| ||||||||||||||||||||| ||||||||||| ||| |||||||| Sbjct 28493 TCTAAGCCCAGGTCACGTTCCCTATTAGTGGGTAAACAATCCAACTCTTGGAGAATTCTG 28434 Query 127 CTTCGGTATGATAGGA 142 ||| ||||||||| Sbjct 28433 CTTTTCAATGATAGGA 28418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854386654272