Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01001213.1 Length=600 Score E Sequences producing significant alignments: (Bits) Value seq1343 356 8e-96 >seq1343 Length=5826 Score = 356 bits (394), Expect = 8e-96 Identities = 415/552 (75%), Gaps = 16/552 (3%) Strand=Plus/Minus Query 53 GGCATTCGGAGTTTGGTTGATTTCGGTAAGCTTGTGGGCCCCCTAGACC-ATCCAGTGCT 111 || |||||||||||| |||| || ||||| ||| | |||| ||| || ||||||| Sbjct 3297 GGTATTCGGAGTTTGATTGAGATCAGTAAGACGGTGAGTCCCCATTACCCATTCAGTGCT 3238 Query 112 CTACCTCCGGGAAGAAACACGCGACGCTGCACCTAAATGCATTTCGGGGAGAACCAGCTA 171 ||||| || | | | | ||||||| |||||||| |||||| ||||||||||||| Sbjct 3237 CTACCCCCTGAGGTATTCGCTCGACGCTCTACCTAAATAGATTTCGCGGAGAACCAGCTA 3178 Query 172 TCACGAAGTTTGATTGGCCTTTCACCCCTATCCACAGGTCATCCCCTCAGTTTTCAACCT 231 || | |||||||||||||||||||||||| ||||| |||||||| || |||| Sbjct 3177 TCTCCGAGTTTGATTGGCCTTTCACCCCTAGCCACAAGTCATCCCAATCTATTGCAACAG 3118 Query 232 AAGTGGGTTCGGTCCTCCACGCGGTCTTACCCGCGCTTCAACCTGCCCATGGATAGATCA 291 | |||||||||||||||| ||| |||||| ||||||||||| ||||| ||||||| Sbjct 3117 ATATGGGTTCGGTCCTCCAGTTGGTGTTACCCAACCTTCAACCTGCTCATGGCTAGATCA 3058 Query 292 CTTCGCTTCGGGTCTTGATCGTGCCACTCATACGCCCTATTCGGACTCGCTTTCGCTACG 351 || | ||||||||| || ||| | ||||||| ||| ||||||||||||||||| Sbjct 3057 CTCGGTTTCGGGTCTAATCCGACGAACTGA-ACGCCCTGTTCAGACTCGCTTTCGCTACG 2999 Query 352 GCTACCCCACACGGGTTAACCT--CGCGACACAACGCAAACTCGCAGGCTCATTCTTCAA 409 |||| || ||| |||| || | || || | | || |||| | | |||| | ||| Sbjct 2998 CCTACACCTACCGGCTTAAGCTTGCTCGTCAGA---CTAAGTCGCTGACCCATTATACAA 2942 Query 410 AAGGCACGCCGTCACCTGGTACCTAAAAGGCACTTCAGCTCCGACGGATTGTAGGCACAT 469 |||| |||| |||||| | | |||| ||| ||||| || | ||||||||| Sbjct 2941 AAGGTACGCTGTCACCCAG-AACTAA-----TCTTGGGCTCCAACTGTTTGTAGGCAACC 2888 Query 470 GGTTTCAGGTACTATTTCACTCCCC--GCCAGGGGTACTTTTCACCTTTCCCTCACGGTA 527 |||||||||| || ||||||||||| | | ||||| ||||||||||||||||||||||| Sbjct 2887 GGTTTCAGGTTCTCTTTCACTCCCCTTGTC-GGGGTGCTTTTCACCTTTCCCTCACGGTA 2829 Query 528 CTTGTCCGCTATCGGTCACCAAGGAGTATTTAGGCTTAACGGGTGGTCCCGCCAGATTCA 587 ||||| |||||||||||| | ||||| |||||||| | |||||| | ||| |||| Sbjct 2828 CTTGTTCGCTATCGGTCATGCACGAGTACTTAGGCTTGGAGAGTGGTCTCCCCATGTTCA 2769 Query 588 CACGAAATTTCA 599 || |||||| Sbjct 2768 GACAGGATTTCA 2757 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1817571609088