Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01001291.1 Length=420 Score E Sequences producing significant alignments: (Bits) Value seq1343 331 2e-88 >seq1343 Length=5826 Score = 331 bits (366), Expect = 2e-88 Identities = 331/416 (80%), Gaps = 14/416 (3%) Strand=Plus/Minus Query 9 CCACAGGTCATTCCGCTAACTTTTTCAACGGTAGTCGGTTCGGTCCTCCAGTTAGTAGTT 68 ||||| ||||| || | || || |||| | | ||||||||||||||||| || ||| Sbjct 3146 CCACAAGTCATCCCAAT--CTATTGCAACAGATATGGGTTCGGTCCTCCAGTTGGT-GTT 3090 Query 69 ACCCAACCTTTCAACCTGCCCATAGGATAGATCGCCCGGTTTTCGGGTCTATTTCCCAGC 128 |||||||||| |||||||| ||| || |||||| | |||||| |||||||| | || | Sbjct 3089 ACCCAACCTT-CAACCTGCTCAT-GGCTAGATCACTCGGTTT-CGGGTCTAAT-CCGACG 3034 Query 129 GACTAGACGCCCTAGTAAGACTCGCTTTTCGCTACGCCTCC-CCTATTCGGTTAAGCTTT 187 ||| ||||||| | ||||||||||| |||||||||| | |||| | |||||||| Sbjct 3033 AACTGAACGCCCTGTTCAGACTCGCTTT-CGCTACGCCTACACCTACCGGCTTAAGCTT- 2976 Query 188 GCCACTGAAAATAAGTCGCTGACCCATTATACAAAAGGTACGCAGTCACCCA--ACAAAG 245 || | | | |||||||||||||||||||||||||||||||| |||||||| || || Sbjct 2975 GCTCGTCAGACTAAGTCGCTGACCCATTATACAAAAGGTACGCTGTCACCCAGAACTAAT 2916 Query 246 --TGGGCTCCCACTGCTTGTACGCATACGGTTTCAGGATCTATTTCACTCCCCTCTCCGG 303 |||||||| |||| ||||| ||| |||||||||| ||| |||||||||||| ||| Sbjct 2915 CTTGGGCTCCAACTGTTTGTAGGCAACCGGTTTCAGGTTCTCTTTCACTCCCCTTGTCGG 2856 Query 304 GGTTCTTTTCGCCTTTCCCTCACGGTACTAGTTCACTATCGGTCAGTCAGTAGTATTTAG 363 ||| |||||| |||||||||||||||||| |||| |||||||||| || |||| |||| Sbjct 2855 GGTGCTTTTCACCTTTCCCTCACGGTACTTGTTCGCTATCGGTCATGCACGAGTACTTAG 2796 Query 364 CCTTGGAGGATGGTCCCCCCATATTCAGACAAAGTTTCTCGTGCTCCGTCCTACTC 419 ||||||| ||||| |||||| |||||||| |||| |||| ||| ||||||| Sbjct 2795 GCTTGGAGAGTGGTCTCCCCATGTTCAGACAGGATTTCACGTGTCCCGCCCTACTC 2740 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1241580606208