Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01002175.1 Length=414 Score E Sequences producing significant alignments: (Bits) Value seq1343 221 3e-55 >seq1343 Length=5826 Score = 221 bits (244), Expect = 3e-55 Identities = 260/348 (75%), Gaps = 34/348 (10%) Strand=Plus/Minus Query 68 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGACCGTGTCTCAGTTCCAGTGTGGC 127 |||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||| Sbjct 718 CAATATTCCCCACTGCTGCCTCCCGTAGGAGTCTGGGCCGTGTCTCAGTCCCAGTGTGGC 659 Query 128 TGGTCATCCTCTCAGACCAGCTAGGGATCGTCGCCTAGGTGGGCCATTACCCCGCCAACT 187 || |||||||||||||||||||| |||||||||||| ||| |||| |||||| |||||| Sbjct 658 TGATCATCCTCTCAGACCAGCTATGGATCGTCGCCTTGGTAGGCCTTTACCCTACCAACT 599 Query 188 AGCTAATCCCATCTGGGTTCATCCGATAGTGAGAGGCCCGAAGGTCCCCCTCTTTGGTCT 247 ||||||||| | |||| ||||| || | || || | ||| || Sbjct 598 AGCTAATCCAACATGGGCTCATC--ATTCTCCGA----TAAATCTTTCCCCAAAAGG--- 548 Query 248 TGCGACGTTATGCGGTATTAGCCACCGTTTCCAGTGGTTATCCCCCTCCATCA-GGCAGT 306 ||| ||| |||||||||| |||||| ||||| || | | | || || Sbjct 547 -GCG----TATACGGTATTAGCACAAGTTTCCCTGAGTTAT-TCCGTAGAGAACGGTAGA 494 Query 307 TTCCCAGACATTACTCACCCGTCCGCCACTCGTCAGCGAAGCAGCAAGCTGCTTCCTGTT 366 |||||| ||||||||||||||| |||||| | | ||||| || Sbjct 493 TTCCCATGCATTACTCACCCGTCTGCCACT-GCCTCCGAAG-AG---------------- 452 Query 367 ACCGTTCGACTTGCATGTGTTAGGCCTGCCGCCAGCGTTCAATCTGAG 414 |||||||||||||||||||||| ||||||||||||||||| |||||| Sbjct 451 ACCGTTCGACTTGCATGTGTTAAGCCTGCCGCCAGCGTTCGTTCTGAG 404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1222380906112