Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq1316 300 5e-79 seq1504 174 5e-41 seq1150 149 2e-33 seq1332 120 1e-24 seq1348 116 1e-23 seq1538 102 3e-19 seq1420 78.8 3e-12 seq1525 75.2 4e-11 >seq1316 Length=19722 Score = 300 bits (332), Expect = 5e-79 Identities = 316/408 (77%), Gaps = 22/408 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| || |||| ||| |||| | ||||||||||||| ||||| | Sbjct 11190 CTTTTACTCTACGAAAGGTTTCCAACCTCTCTGAGCCAGCCTTAGGACACCTACGTTACG 11131 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 ||| | |||||| ||||||||| |||||||||| ||||| | | || || || || Sbjct 11130 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGTCTGACTTTTTTCTCGACGCGACTC 11071 Query 127 GGCC---CGCGAAGGACC-----TTAACGCCAGAAAATGGTCGGTGAAGACCAGTTCCGC 178 | | | ||| || |||| ||| || | | ||| | || || Sbjct 11070 ACGCTAGCACCAAGTGCCAACGTTTAAACCCAAAACACA-----TAAAGGC--GT--CGT 11020 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAAACGG 236 | || || ||||||||||| || | | |||||||||||||||||||| ||||| Sbjct 11019 CTAATCGAGTAAGTAAAAAATCGTTGAAAGTAGTGGTATTTCACTTGCGATCCGAAGAT- 10961 Query 237 CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAA 296 ||||||||||| |||||||||| ||| | ||||| ||||| ||||||||||||||||| Sbjct 10960 CTCCCACTTATGCTACACCTCT-AAGACTCATCACAGAGTCGAACTAGAGTCAAGCTCAA 10902 Query 297 CAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAG 356 ||||| ||||||||||||||| || |||||||||||||||||||||||| |||||||||| Sbjct 10901 CAGGG-CTTCTTTCCCCGCTGTTTTCGCCAAGCCCGTTCCCTTGGCTGTAGTTTCGCTAG 10843 Query 357 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 404 |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 10842 ATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTC 10795 Score = 104 bits (114), Expect = 8e-20 Identities = 88/107 (82%), Gaps = 1/107 (1%) Strand=Plus/Minus Query 208 GTAGTGGTATTTCACTTGCGC-CGAAACGGCTCCCACTTATTCTACACCTCTCAAGTCAT 266 |||||||||||||||||||| | ||| || ||||||| || ||||||||||| | Sbjct 7453 GTAGTGGTATTTCACTTGCGATCCAAAGATCTTCCACTTACGCTCCACCTCTCAAGACTC 7394 Query 267 TTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCC 313 || | ||||| ||||||||||||||||| |||||||||||||||| Sbjct 7393 ACCATAGAGTCGAACTAGAGTCAAGCTCAAAAGGGTCTTCTTTCCCC 7347 >seq1504 Length=261502 Score = 174 bits (192), Expect = 5e-41 Identities = 102/106 (96%), Gaps = 0/106 (0%) Strand=Plus/Plus Query 415 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 474 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 233908 TGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTT 233967 Query 475 GGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 ||| || || | |||||||||||||||||||||||||||||||||| Sbjct 233968 GGTCGAGTTACCTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 234013 >seq1150 Length=1226963 Score = 149 bits (164), Expect = 2e-33 Identities = 96/105 (91%), Gaps = 0/105 (0%) Strand=Plus/Minus Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTG 475 |||||||||||||||||||| | ||||||||||||||||||||||||| |||||||||| Sbjct 1075679 GACGAGGCATTTGGCTACCTCACGAGAGTCATAGTTACTCCCGCCGTTCACCCGCGCTTT 1075620 Query 476 GTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 || | || | |||||||||||||||||||||||||||||||||| Sbjct 1075619 GTCAAGTTACCTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 1075575 >seq1332 Length=151725 Score = 120 bits (132), Expect = 1e-24 Identities = 92/109 (84%), Gaps = 4/109 (4%) Strand=Plus/Plus Query 416 GACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCG----TTTACCCGCG 471 ||| || ||||||| ||||| |||||||||| ||||||||||| || |||||||||| Sbjct 38519 GACAAGACATTTGGTTACCTGAAGAGAGTCAAAGTTACTCCCGTCGCTTGTTTACCCGCG 38578 Query 472 CTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 |||||| || || | |||||||||||| |||||| ||||||||||||| Sbjct 38579 CTTGGTCGAGTTACCCCACTTTGACATTTAGAGCAATGGGCAGAAATCA 38627 >seq1348 Length=559781 Score = 116 bits (128), Expect = 1e-23 Identities = 84/98 (86%), Gaps = 7/98 (7%) Strand=Plus/Plus Query 423 CATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAAT 482 |||||||||||||| ||||||||| |||||||||||||||||||||||||||||| || | Sbjct 8959 CATTTGGCTACCTTTAGAGAGTCACAGTTACTCCCGCCGTTTACCCGCGCTTGGTCGAGT 9018 Query 483 TTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | ||||||||||||| |||||||||||||| Sbjct 9019 TATCTCACTTTGACATT-------CTGGGCAGAAATCA 9049 Score = 86.0 bits (94), Expect = 2e-14 Identities = 61/70 (87%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 437 AAGAGAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGAC 496 |||||||||| ||| |||||||||||||||||||||||||| || || |||||||||| Sbjct 9117 AAGAGAGTCACAGTAACTCCCGCCGTTTACCCGCGCTTGGTCGAGTTATCTCACTTTGAC 9176 Query 497 ATTCAGAGCA 506 |||| | ||| Sbjct 9177 ATTCTGGGCA 9186 >seq1538 Length=573084 Score = 102 bits (112), Expect = 3e-19 Identities = 70/79 (89%), Gaps = 0/79 (0%) Strand=Plus/Minus Query 441 GAGTCATAGTTACTCCCGCCGTTTACCCGCGCTTGGTTGAATTTCTTCACTTTGACATTC 500 ||||||||| | ||||||||||||||||||||||||| || || | |||||||||||| Sbjct 446693 GAGTCATAGCTGCTCCCGCCGTTTACCCGCGCTTGGTCGAGTTACCCCACTTTGACATTT 446634 Query 501 AGAGCACTGGGCAGAAATC 519 ||||||||| ||||||||| Sbjct 446633 AGAGCACTGAGCAGAAATC 446615 >seq1420 Length=122554 Score = 78.8 bits (86), Expect = 3e-12 Identities = 78/101 (77%), Gaps = 0/101 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| |||||| || |||| ||| |||| | ||||||||||||| ||||| | Sbjct 37785 CTTTTACTCTACGAAAGGTTTCCAACCTCTCTGAGCCAGCCTTAGGACACCTACGTTACG 37844 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 ||| | |||||| ||||||||| |||||||||| ||||| Sbjct 37845 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGTCTGAC 37885 >seq1525 Length=543006 Score = 75.2 bits (82), Expect = 4e-11 Identities = 78/101 (77%), Gaps = 1/101 (1%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| | |||| ||| |||| | ||||||||||||| ||||| | Sbjct 482139 CTTTTACTCTACAAAGGTTTTCAAC-CTCTCTGAGCCAGCCTTAGGACACCTACGTTACG 482197 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGAC 107 ||| | |||||| ||||||||| |||||||||| ||||| Sbjct 482198 ATTTGATAGATGTACCGCCCCAGTCAAACTCCCCGTCTGAC 482238 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635174458176