Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= AAMG01002207.1 Length=564 Score E Sequences producing significant alignments: (Bits) Value seq1343 405 2e-110 >seq1343 Length=5826 Score = 405 bits (448), Expect = 2e-110 Identities = 433/567 (76%), Gaps = 24/567 (4%) Strand=Plus/Minus Query 1 TCGACTTGTAAGTCTCGCAGTCAAGCTCCCTTGTGCACTTACACTC-ACCACCTGATTGC 59 ||||||||| |||| ||||||| || ||| ||| || ||||| || | | |||| | Sbjct 4613 TCGACTTGTCTGTCTTGCAGTCAGGCGGGCTTATGCCATTGCACTCGACGAAC-GATTTC 4555 Query 60 CAACCAGGCTGAGGGAACCTTTGGGCGCCTCCGTTACATTTTGGGAGGGCAACCGCCCCA 119 | ||| ||||| ||| | | ||||||||||||| ||| ||||| | ||||||||| Sbjct 4554 CGACCGTTCTGAGCCCACCATCGCGCGCCTCCGTTACTCTTTAGGAGG-CGACCGCCCCA 4496 Query 120 GTTAAACTACCCACCAGGCACTGTCCCCAACCCAGATC-ATGGGCCAAGGTTAGATATCC 178 || ||||||||||||| ||| |||| |||| ||| | ||| | |||||| ||| Sbjct 4495 GTCAAACTACCCACCATACACGGTCCTGGACCCGGATATACGGGTCGCAGTTAGACATCT 4436 Query 179 ACTACGGTCAGAGTGGTATTTCAACAACGACTCCACAACCACTAGCGTGGCCGCATCATA 238 | ||| | || |||||||||||| | |||||||| | || ||| |||| ||| | Sbjct 4435 ATGACGATAAGGGTGGTATTTCAAGGATGACTCCACGAAGGCTGGCGCCTCCGCTTCAAA 4376 Query 239 GTCTCCCACCTATCCTACACAAACCGCACCGAATGCCAATACCAAGCTATAGTGAAGGTC 298 |||| |||||||||||||||| ||| | ||||||| | |||||||||| ||||| Sbjct 4375 GTCTACCACCTATCCTACACATGTCGCCACAAATGCCAGTGTAAAGCTATAGTAAAGGTG 4316 Query 299 C-CGGGGTCTTTTCGTCCTGCCGCGCGAAACGAGCATCTTTACTCGTACTGCAATTTCAC 357 | |||||||||| |||| |||| ||| | ||||||| || | | | ||||||||| Sbjct 4315 CACGGGGTCTTTCCGTCTAACCGCAGGAACCCCGCATCTTCACGGGGAATTCAATTTCAC 4256 Query 358 CGGGCCTGTGGTTGAGACAGCAGGGGAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 417 | | ||| | | |||||||| ||| |||||||||||||||||||||||||||||||||| Sbjct 4255 TGAGTCTGCGTTGGAGACAGCGGGGAAGTCGTTACGCCATTCGTGCAGGTCGGAACTTAC 4196 Query 418 CCGACAAGGAATTTCGCTACCTTAGGATGGTTATAGTTACCACCGCCGTTTACTGGGGCT 477 ||||||||||||||||||||||||||| ||||||||||| |||||||||||||||||| Sbjct 4195 CCGACAAGGAATTTCGCTACCTTAGGACCGTTATAGTTACGGCCGCCGTTTACTGGGGCT 4136 Query 478 TCAATTACCCGCCTCACACACCACGTGGTGTGCTCACGAGTCCTCTTAACCTTCCAGCAC 537 |||||| | | || ||| ||| |||||||||||||||||||| Sbjct 4135 TCAATT-CAAGGCTTGCAC-------------CTC-----TCCTCTTAACCTTCCAGCAC 4095 Query 538 CGGGCAGGCGTCAGTCCGTATACCTCG 564 |||||||||||||| || ||||| ||| Sbjct 4094 CGGGCAGGCGTCAGACCCTATACGTCG 4068 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1702373408512