Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20carpocapsae_20[genbank_20GCA_5F000757645.1_202014-09- 24] 1,562 sequences; 85,934,671 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq964 136 3e-27 seq893 134 1e-26 >seq964 Length=244507 Score = 136 bits (150), Expect = 3e-27 Identities = 419/635 (66%), Gaps = 25/635 (4%) Strand=Plus/Minus Query 61195 TTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTA 61254 |||||| | |||| |||||||||| ||||||||||| || || |||||||| || | Sbjct 34382 TTCATTTCGCGTGTGCTGGCGTTCTTCGCCGCTTCGGATGGAATTGTCAATGAAAACCTC 34323 Query 61255 TTGGAACGTTTCGCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 | || || ||| | |||||||| |||| || | || || | | || ||| ||||||| Sbjct 34322 GTCGAGCGCTTCACCCAGGAGGT-CAAGATGCCCGAAGCACTCTCCTTTTACAGCTTCCA 34264 Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373 ||| || | ||| ||||||| ||||||||| | ||||| | ||| ||| Sbjct 34263 GATGGCGGTAGAGGGCATCCACTCCGAGATGTACTCCAAAATGATCGAAGCTTACGTCAT 34204 Query 61374 GGAGC-----GGGCGGAACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGT 61427 || | | ||| ||| || | ||||| ||| | | ||| | | || | Sbjct 34203 CGACCCCAAAGAGCGCAACATG-----CTCTTCAACGCCCTGCAAGA-GTTCCCCTGCAT 34150 Query 61428 GAAGCGGAAAGCGGATTGGGCCTTCAATTGGATC-ACCAGTACAACGGCTACATTTGGTG 61486 ||| ||| || |||||||| || |||||| | | | ||| ||| | || || Sbjct 34149 CAAGAAGAAGGCCGATTGGGCGCTCCGCTGGATCGGCGACAAGAAC-GCTTCCTTCGGAA 34091 Query 61487 AACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAA 61546 || | | || || || | || || || | |||||| || || || || || | Sbjct 34090 CTCGTGTCATCGCGTTCGCCGCCGTTGAAGGCATTTTTTTCTCGGGTTCCTTCGCTGCCA 34031 Query 61547 TCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATAT 61606 |||| ||| | ||||| |||||||| ||||| || || ||| ||| || ||| |||| | Sbjct 34030 TCTTCTGGCTCAAGAAGCGTGGACTGATGCCTGGACTCACCCACAGTAACGAGCTGATCT 33971 Query 61607 CACGCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTG 61665 | || ||||| || | || | || || | |||| || | | ||| ||||||| | Sbjct 33970 CCCGAGACGAAGGACTTCACCGCGACTTCGCCTGTCTT-ATGTACAA---GTATCTGGAG 33915 Query 61666 AATCGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAG 61725 | || ||| | ||| | ||| ||| | ||||| ||||| | ||||| ||| Sbjct 33914 CAGAAGCCCTCGAACGAGAAGATCAATGAAATTATCCGTGAAGCGGTGAAGATCGAGCAG 33855 Query 61726 GAATTTCTGACTGA--CGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGT 61783 || | ||| || || ||||| ||||| | || |||||||| || | || |||| Sbjct 33854 GAGTATCTCACCGAGTCGCTT--CCCGTGGACATGATTGGCATGAACTGCGACCTGATGT 33797 Query 61784 CGCAGTATATTGAATTTGTTGCCGACCGTCTGTTG 61818 | ||||| || |||| || ||||||| ||| ||| Sbjct 33796 CCCAGTACATCGAATACGTCGCCGACCATCTTTTG 33762 >seq893 Length=1694367 Score = 134 bits (148), Expect = 1e-26 Identities = 319/476 (67%), Gaps = 12/476 (3%) Strand=Plus/Plus Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || || || || ||||||||||| |||||| | ||||| | ||| || | || ||| Sbjct 1631366 CCTCCCTGATCAACGTAGCGAGCCGTGTTGTTGTACACACGGAGCATGGGGATCAGACCG 1631425 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || || |||| ||||| || |||| | ||| || || || |||| | || Sbjct 1631426 TTGGAGGTGCCGTTGGTACCTGCGATCATCGTTCCCGAGGCACGGATGCAGTGAGCGTTA 1631485 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCAC--TGTCCGGAATA 66665 || || || || ||||| | ||| ||||| ||| | | ||||| ||| ||| | Sbjct 1631486 AGTCCGATGCCTCCGGCGGACTTAGAGAT--CAGGGCGCACTGCCACAGGGTCTTGAAGA 1631543 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 ||||||| |||||||| | | || ||||||||| |||| ||||| | ||||| ||| Sbjct 1631544 TGCCGTCGATGGAGTCGTCGTGCATCGTCAGGAGGAAGCACGAACTCATCTGGGGCTTGC 1631603 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA---GACATGT 66782 || |||| ||||||||| || | ||||||||||| | |||| |||||| Sbjct 1631604 AGGTTCCGGCGTTGAAGAGGGTAGGCGACGCGTGCGTAAACCA---GCGATCCGACATGA 1631660 Query 66783 AATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCAT-GAATCCCGAGTGCACATCGC 66841 ||||| || |||||| | || || |||| || | || |||| | ||| ||| Sbjct 1631661 GGTTGTAGGTTTCGATGGCTGCGTCGATGTCCTCCTTGTGGACTCCCACGGCTACA-CGC 1631719 Query 66842 ATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGT 66901 || || | || || || || ||| | | | ||||| | || ||||| || ||| Sbjct 1631720 ATAAGCATGTGCTGCGGACGCTCGGTGATCTTGCCGTTGATCTTCAGCAAGTACGACCGT 1631779 Query 66902 TCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGGC 66957 ||||||||||||| || || || | ||| ||| ||| ||| |||||| || Sbjct 1631780 TCCAGGGTCTTGAACCCGAAATAGGTGTACGCGAAGTCGCGGTCATACACGATTGC 1631835 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397560431547680