Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq5716 116 3e-21
seq5071 100 2e-16
>seq5716
Length=132174
Score = 116 bits (128), Expect = 3e-21
Identities = 142/194 (73%), Gaps = 0/194 (0%)
Strand=Plus/Minus
Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073
|| || || ||||| ||||| | || || || | | |||| || ||||||||||||
Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045
Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133
||||| ||| || || |||||||||| || ||| ||| ||||||||||||||
Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985
Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193
||||| | |||||| ||||| ||||| || | || || || || | | |||||||
Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAGA 121925
Query 66194 GCGCGTGCCTTCAC 66207
||||| ||||||||
Sbjct 121924 GCGCGAGCCTTCAC 121911
>seq5071
Length=368534
Score = 100 bits (110), Expect = 2e-16
Identities = 305/460 (66%), Gaps = 16/460 (3%)
Strand=Plus/Minus
Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245
||||| |||||| ||||| ||||| ||||| || || || || || |||||||||
Sbjct 135555 GAACAGTTTTTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTCAAT 135496
Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTA 61304
|| ||| | | || |||||| | || ||||| |||| || ||||||| | || |||||
Sbjct 135495 GAAAATCTCATCGATCGTTTCACTCAAGAGGT-CAAGATGCCGGAGGCCCTTTCGTTCTA 135437
Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364
| ||||||| || ||| | ||| | ||||| || |||||| | || || |
Sbjct 135436 CAGCTTCCAAATCGCCGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGATTGAGGC 135377
Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGG 61423
||| | | || | || | |||| | | ||||| |||||| | | || ||
Sbjct 135376 CTACGTGACCGATC-CTCGTGAGAAGAACAAGCTCTTCAACGCCATCCA-AGAATTCCCA 135319
Query 61424 CG-GTGAAGCGGAAAGCGGATTGGGC-CTTCAATTGGATC----ACCAGTACAACGGCTA 61477
| | || |||||| || ||||| |||| ||||||| || || || ||
Sbjct 135318 TGCATCAAAAAGAAAGCTGACTGGGCGCTTC-GTTGGATCGGTGACAAGAAC----GCGT 135264
Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537
| || || ||| || | || || || | || ||||| | || ||| |||||||
Sbjct 135263 CGTTCGGAACACGTGTGATCGCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGT 135204
Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597
| || || || || |||||||| || ||||| || ||||| || || ||| |||||| |
Sbjct 135203 TCGCTGCCATATTCTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAACG 135144
Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637
| | || || || || || ||| | ||| | || || ||
Sbjct 135143 AACTCATTTCCCGGGATGAAGGCCTACATCGCGACTTCGC 135104
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397539732169760
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |