Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq5716 116 3e-21 seq5071 100 2e-16 >seq5716 Length=132174 Score = 116 bits (128), Expect = 3e-21 Identities = 142/194 (73%), Gaps = 0/194 (0%) Strand=Plus/Minus Query 66014 GATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCAC 66073 || || || ||||| ||||| | || || || | | |||| || |||||||||||| Sbjct 122104 GAGGCCAGATTGCAAACAGCGACTTCATCTGGGGACGAGTACTGCACTATTTCGGTGCAC 122045 Query 66074 AGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCC 66133 ||||| ||| || || |||||||||| || ||| ||| |||||||||||||| Sbjct 122044 AGATTTGAGCACTTGATCGTTCCCAAATTCTTCTGGTTAGACTTTCGATTGCATGCATCT 121985 Query 66134 TTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGA 66193 ||||| | |||||| ||||| ||||| || | || || || || | | ||||||| Sbjct 121984 TTGTAAAGCATGTAAGGAGTTCCGGTTTCGATCTGCGAAGTAACAATCTCTTCCCAAAGA 121925 Query 66194 GCGCGTGCCTTCAC 66207 ||||| |||||||| Sbjct 121924 GCGCGAGCCTTCAC 121911 >seq5071 Length=368534 Score = 100 bits (110), Expect = 2e-16 Identities = 305/460 (66%), Gaps = 16/460 (3%) Strand=Plus/Minus Query 61186 GAACAACATTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAAT 61245 ||||| |||||| ||||| ||||| ||||| || || || || || ||||||||| Sbjct 135555 GAACAGTTTTTCATCTCGCATGTATTGGCATTCTTCGCAGCATCAGATGGCATCGTCAAT 135496 Query 61246 GAGAATTTATTGGAACGTTTCGCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTA 61304 || ||| | | || |||||| | || ||||| |||| || ||||||| | || ||||| Sbjct 135495 GAAAATCTCATCGATCGTTTCACTCAAGAGGT-CAAGATGCCGGAGGCCCTTTCGTTCTA 135437 Query 61305 CGGCTTCCAGATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATAC 61364 | ||||||| || ||| | ||| | ||||| || |||||| | || || | Sbjct 135436 CAGCTTCCAAATCGCCGTCGAGGGGATTCACTCTGAAATGTACTCGAAGATGATTGAGGC 135377 Query 61365 GTACATCAGGGAGCGGGCGGAACGTGAACGA-TTGTTCAATGCCATCGAGACGATACCGG 61423 ||| | | || | || | |||| | | ||||| |||||| | | || || Sbjct 135376 CTACGTGACCGATC-CTCGTGAGAAGAACAAGCTCTTCAACGCCATCCA-AGAATTCCCA 135319 Query 61424 CG-GTGAAGCGGAAAGCGGATTGGGC-CTTCAATTGGATC----ACCAGTACAACGGCTA 61477 | | || |||||| || ||||| |||| ||||||| || || || || Sbjct 135318 TGCATCAAAAAGAAAGCTGACTGGGCGCTTC-GTTGGATCGGTGACAAGAAC----GCGT 135264 Query 61478 CATTTGGTGAACGATTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGT 61537 | || || ||| || | || || || | || ||||| | || ||| ||||||| Sbjct 135263 CGTTCGGAACACGTGTGATCGCCTTCGCTGCTGTGGAGGGCATTTTCTTCTCAGGATCGT 135204 Query 61538 TTGCCGCAATCTTTTGGTTGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATG 61597 | || || || || |||||||| || ||||| || ||||| || || ||| |||||| | Sbjct 135203 TCGCTGCCATATTCTGGTTGAAAAAGCGTGGTCTCATGCCTGGCCTCACCCACAGCAACG 135144 Query 61598 AGTTGATATCACGCGACGAGGGCATGCATTGTGATTTTGC 61637 | | || || || || || ||| | ||| | || || || Sbjct 135143 AACTCATTTCCCGGGATGAAGGCCTACATCGCGACTTCGC 135104 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397539732169760