Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24]
5,834 sequences; 82,504,363 total letters
Query= NC_031940.1
Length=77375
Score E
Sequences producing significant alignments: (Bits) Value
seq1811 178 6e-40
>seq1811
Length=36858
Score = 178 bits (196), Expect = 6e-40
Identities = 378/559 (68%), Gaps = 9/559 (2%)
Strand=Plus/Plus
Query 6947 GCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGACCGGGGAACTGGTGGACATG 7006
||||| || ||| || ||| || | || || || |||||||| ||| || |||
Sbjct 23068 GCGGTGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCCTGTCGGGCATT 23127
Query 7007 CTGCCGGCACCGAAAGGCAAACGCTTCACAC-GACTGAACAGCAGACGTTACTTTCCCAC 7065
||||| ||| || | ||||| |||| ||| || | || || | || | ||
Sbjct 23128 GATCCGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGCTGCTGAGCTAC 23187
Query 7066 GGTGTGGCAACGGCGTATGTGGAAAGCGG--CGTGCTGCGTATTCAGCGGGATATCACGA 7123
|| | || || ||||| || |||| ||| | || |||||||| | | ||||
Sbjct 23188 GGCATTGCTACCGCGTACTACGAGGGCGGTTCGTACCGC--ATTCAGCGCGCCGTGACGA 23245
Query 7124 CGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGC 7183
||||| | || || || || ||| |||| ||| || ||||||||| ||||||
Sbjct 23246 CGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCGAGCCGCTGC 23305
Query 7184 ATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCG 7241
| ||||| || | ||| | ||| ||| || ||||||||| |||||||| ||
Sbjct 23306 A--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCCGTATTACCAGCAAATACGGCCG 23363
Query 7242 CCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGC 7301
|| || || || || ||||| || ||||| |||||||||||| || |||||
Sbjct 23364 TCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCGTGACGCCGTT 23423
Query 7302 CGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGATGGAGCGGGAAGGCATCGTGGA 7361
|| |||||||| ||||||| | | || || || ||||||| | ||| | || ||
Sbjct 23424 GGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCGGCCTGGTCGA 23483
Query 7362 AAACTTCGATCTGTTCCAGCAACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCG 7421
||| | || |||||| ||||||| ||||| |||||||| ||||||| | |||||||
Sbjct 23484 GAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAGACCCGAACCG 23543
Query 7422 CCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAA 7481
| | |||||||| ||||| ||| ||||| ||| | || || | || || |
Sbjct 23544 AATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGTCCTGGCCCTGTCGTA 23603
Query 7482 CCAGTTCCGTCTGCAGTAC 7500
|||||||| |||||||||
Sbjct 23604 TCAGTTCCGGCTGCAGTAC 23622
Score = 172 bits (190), Expect = 3e-38
Identities = 280/401 (70%), Gaps = 4/401 (1%)
Strand=Plus/Plus
Query 46691 CGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGC 46750
|| |||||||| | | ||||||||| | || || || || ||| |||| |
Sbjct 23224 CGCATTCAGCGCGCCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCC 23283
Query 46751 TACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTG 46808
|| || ||||||||| ||||||| ||||| || | ||| | ||| ||| ||
Sbjct 23284 TATCTGGACAGCGAGCCGCTGCA--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCC 23341
Query 46809 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 46868
||||||||| |||||||| || || || || || || ||||| || ||||| ||
Sbjct 23342 GTATTACCAGCAAATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATG 23401
Query 46869 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGA 46928
|||||||||| || ||||| || |||||||| ||||||| | | || || ||
Sbjct 23402 GTCAGGCCATCGTGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGC 23461
Query 46929 TGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTGAGC 46988
||||||| | ||| | || || ||| | || |||||| ||||||| ||||| |||||||
Sbjct 23462 TGGAGCGCGCCGGCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGC 23521
Query 46989 GTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 47048
| ||||||| | ||||||| | | |||||||| ||||| ||| ||||| |||
Sbjct 23522 GCGACGCGAAAGACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGC 23581
Query 47049 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089
| || || | || || | |||||||| |||||||||
Sbjct 23582 TGCGCGTCCTGGCCCTGTCGTATCAGTTCCGGCTGCAGTAC 23622
Score = 152 bits (168), Expect = 3e-32
Identities = 262/379 (69%), Gaps = 1/379 (0%)
Strand=Plus/Plus
Query 8647 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 8706
||||| || | ||||| || |||||||| ||||| || || || |||||| |||||
Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930
Query 8707 GGTCAGATGATGGCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTC 8766
|| | ||||||||| ||||||| || ||||| | ||| || || ||||| |
Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACATGAGCCAAACCGAAGTGGTGACC 24990
Query 8767 CTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCT 8826
|||||||| || ||||||||||| | ||| | |||| |||| | | | | | || ||
Sbjct 24991 CTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTCG 25050
Query 8827 GATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATT 8886
| |||||||| || || ||| | |||| || ||||| || | || | |
Sbjct 25051 GCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCTC 25110
Query 8887 GCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAAGAAATTGCCTCAACCGG 8946
|| |||||||| | | | |||||| |||| | | || || | || | |||||
Sbjct 25111 GCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCG-GCCAGGAGGTGGCAGCCACCGG 25169
Query 8947 CATCAAAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGA 9006
|||||||||||| |||||| |||| | || || | | || |||||||| ||||||||
Sbjct 25170 CATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGA 25229
Query 9007 AGCCTTAAGAGCGCTGCGG 9025
||| || | ||| |||||
Sbjct 25230 AGCGTTCAAGGCGTTGCGG 25248
Score = 150 bits (166), Expect = 9e-32
Identities = 260/378 (69%), Gaps = 0/378 (0%)
Strand=Plus/Plus
Query 48237 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 48296
||||| || | ||||| || |||||||| ||||| || || || |||||| |||||
Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930
Query 48297 GGTCAGATGATGGCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTC 48356
|| | ||||||||| ||||||| || ||||| | ||| || || ||||| |
Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACATGAGCCAAACCGAAGTGGTGACC 24990
Query 48357 CTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCT 48416
|||||||| || ||||||||||| | ||| | |||| |||| | | | | | || ||
Sbjct 24991 CTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTCG 25050
Query 48417 GATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATT 48476
| |||||||| || || ||| | |||| || ||||| || | || | |
Sbjct 25051 GCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCTC 25110
Query 48477 GCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAGAAATTGCCTCAACCGGC 48536
|| |||||||| | | | |||||| |||| | | || | || | ||||||
Sbjct 25111 GCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCGGCCAGGAGGTGGCAGCCACCGGC 25170
Query 48537 ATCAAAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGAA 48596
||||||||||| |||||| |||| | || || | | || |||||||| |||||||||
Sbjct 25171 ATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGAA 25230
Query 48597 GCCTTAAGAGCGCTGCGG 48614
|| || | ||| |||||
Sbjct 25231 GCGTTCAAGGCGTTGCGG 25248
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 247457604049264
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |