Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20feltiae_20[genbank_20GCA_5F000757705.1_202014-09-24] 5,834 sequences; 82,504,363 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq1811 178 6e-40 >seq1811 Length=36858 Score = 178 bits (196), Expect = 6e-40 Identities = 378/559 (68%), Gaps = 9/559 (2%) Strand=Plus/Plus Query 6947 GCGGTTTTTATCCGTAACGATCCGGCGCGCCCGACCCAGACCGGGGAACTGGTGGACATG 7006 ||||| || ||| || ||| || | || || || |||||||| ||| || ||| Sbjct 23068 GCGGTGTTCATCAGTGCCGACCCCGGCCGGCCAACGCAGACCGGCACCCTGTCGGGCATT 23127 Query 7007 CTGCCGGCACCGAAAGGCAAACGCTTCACAC-GACTGAACAGCAGACGTTACTTTCCCAC 7065 ||||| ||| || | ||||| |||| ||| || | || || | || | || Sbjct 23128 GATCCGGCCCCGGCCAGCGACCGCTTTACACTGACCGAGCGTCAATCGCTGCTGAGCTAC 23187 Query 7066 GGTGTGGCAACGGCGTATGTGGAAAGCGG--CGTGCTGCGTATTCAGCGGGATATCACGA 7123 || | || || ||||| || |||| ||| | || |||||||| | | |||| Sbjct 23188 GGCATTGCTACCGCGTACTACGAGGGCGGTTCGTACCGC--ATTCAGCGCGCCGTGACGA 23245 Query 7124 CGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGCTACCTTGACAGCGAGACGCTGC 7183 ||||| | || || || || ||| |||| ||| || ||||||||| |||||| Sbjct 23246 CGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCCTATCTGGACAGCGAGCCGCTGC 23305 Query 7184 ATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTGTTATTACCAGTAAATACGGGCG 7241 | ||||| || | ||| | ||| ||| || ||||||||| |||||||| || Sbjct 23306 A--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCCGTATTACCAGCAAATACGGCCG 23363 Query 7242 CCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGC 7301 || || || || || ||||| || ||||| |||||||||||| || ||||| Sbjct 23364 TCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATGGTCAGGCCATCGTGACGCCGTT 23423 Query 7302 CGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGATGGAGCGGGAAGGCATCGTGGA 7361 || |||||||| ||||||| | | || || || ||||||| | ||| | || || Sbjct 23424 GGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGCTGGAGCGCGCCGGCCTGGTCGA 23483 Query 7362 AAACTTCGATCTGTTCCAGCAACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCG 7421 ||| | || |||||| ||||||| ||||| |||||||| ||||||| | ||||||| Sbjct 23484 GAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGCGCGACGCGAAAGACCCGAACCG 23543 Query 7422 CCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAA 7481 | | |||||||| ||||| ||| ||||| ||| | || || | || || | Sbjct 23544 AATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGCTGCGCGTCCTGGCCCTGTCGTA 23603 Query 7482 CCAGTTCCGTCTGCAGTAC 7500 |||||||| ||||||||| Sbjct 23604 TCAGTTCCGGCTGCAGTAC 23622 Score = 172 bits (190), Expect = 3e-38 Identities = 280/401 (70%), Gaps = 4/401 (1%) Strand=Plus/Plus Query 46691 CGTATTCAGCGGGATATCACGACGTACAGGAAAAATGCGTATGGTGTGGCGGATAACAGC 46750 || |||||||| | | ||||||||| | || || || || ||| |||| | Sbjct 23224 CGCATTCAGCGCGCCGTGACGACGTACCAGCGCAACGCATACGGCCAGGCCGATACGTCC 23283 Query 46751 TACCTTGACAGCGAGACGCTGCATACCAGT--GCTTATGTGTTGCGCCGTCTGAAATCTG 46808 || || ||||||||| ||||||| ||||| || | ||| | ||| ||| || Sbjct 23284 TATCTGGACAGCGAGCCGCTGCA--CCAGTCGGCGCACGTGATTCGCAACCTGCAAGGCC 23341 Query 46809 TTATTACCAGTAAATACGGGCGCCATAAACTTGCTAATGATGGTACGCGTTTCGGGTCTG 46868 ||||||||| |||||||| || || || || || || ||||| || ||||| || Sbjct 23342 GTATTACCAGCAAATACGGCCGTCACAAGCTGGCCAACGATGGCACCGCCTTCGGCGATG 23401 Query 46869 GTCAGGCCATTGTCACGCCTGCCGTTATCCGTGGTGAGCTGGGATCAACATATCGCCAGA 46928 |||||||||| || ||||| || |||||||| ||||||| | | || || || Sbjct 23402 GTCAGGCCATCGTGACGCCGTTGGTGATCCGTGGCGAGCTGGTGGCGGCCTACGGCGAGC 23461 Query 46929 TGGAGCGGGAAGGCATCGTGGAAAACTTCGATCTGTTCCAGCAACATCTGATAGTTGAGC 46988 ||||||| | ||| | || || ||| | || |||||| ||||||| ||||| ||||||| Sbjct 23462 TGGAGCGCGCCGGCCTGGTCGAGAACATGGAGCTGTTCAAGCAACACCTGATCGTTGAGC 23521 Query 46989 GTAACGCGAACAATTCGAACCGCCTGGATGTGCTGTTTCCGCCTGATTATGTCAATCAGT 47048 | ||||||| | ||||||| | | |||||||| ||||| ||| ||||| ||| Sbjct 23522 GCGACGCGAAAGACCCGAACCGAATCGCGGTGCTGTTCCCGCCGGATCTGGTCAACCAGC 23581 Query 47049 TACGTGTGTTTGCAGTGCTTAACCAGTTCCGTCTGCAGTAC 47089 | || || | || || | |||||||| ||||||||| Sbjct 23582 TGCGCGTCCTGGCCCTGTCGTATCAGTTCCGGCTGCAGTAC 23622 Score = 152 bits (168), Expect = 3e-32 Identities = 262/379 (69%), Gaps = 1/379 (0%) Strand=Plus/Plus Query 8647 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 8706 ||||| || | ||||| || |||||||| ||||| || || || |||||| ||||| Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930 Query 8707 GGTCAGATGATGGCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTC 8766 || | ||||||||| ||||||| || ||||| | ||| || || ||||| | Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACATGAGCCAAACCGAAGTGGTGACC 24990 Query 8767 CTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCT 8826 |||||||| || ||||||||||| | ||| | |||| |||| | | | | | || || Sbjct 24991 CTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTCG 25050 Query 8827 GATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATT 8886 | |||||||| || || ||| | |||| || ||||| || | || | | Sbjct 25051 GCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCTC 25110 Query 8887 GCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAAGAAATTGCCTCAACCGG 8946 || |||||||| | | | |||||| |||| | | || || | || | ||||| Sbjct 25111 GCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCG-GCCAGGAGGTGGCAGCCACCGG 25169 Query 8947 CATCAAAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGA 9006 |||||||||||| |||||| |||| | || || | | || |||||||| |||||||| Sbjct 25170 CATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGA 25229 Query 9007 AGCCTTAAGAGCGCTGCGG 9025 ||| || | ||| ||||| Sbjct 25230 AGCGTTCAAGGCGTTGCGG 25248 Score = 150 bits (166), Expect = 9e-32 Identities = 260/378 (69%), Gaps = 0/378 (0%) Strand=Plus/Plus Query 48237 CAGTTTGCGAACGACGCAGTGAAAATGGGTGTGGCGTTTGATACCACTGCCGAAGAGTCC 48296 ||||| || | ||||| || |||||||| ||||| || || || |||||| ||||| Sbjct 24871 CAGTTCGCCGAGGACGCGGTAAAAATGGGCGTGGCTTTCGACCAGACGGCCGAACAGTCC 24930 Query 48297 GGTCAGATGATGGCGCAGTGGCGGACAGCGTTCAAACTGACGCAGGAAGACGTGGTTGTC 48356 || | ||||||||| ||||||| || ||||| | ||| || || ||||| | Sbjct 24931 GGGGAAATGATGGCGAAGTGGCGCACCGCGTTTCACATGAGCCAAACCGAAGTGGTGACC 24990 Query 48357 CTGGCCGATAAAATCAACTATCTGGGGAATACCGGCCCGGCAAATGCGAAGAAGATTTCT 48416 |||||||| || ||||||||||| | ||| | |||| |||| | | | | | || || Sbjct 24991 CTGGCCGACAAGATCAACTATCTAGCGAACAACGGCGCGGCCAGTACCGCGCAAATCTCG 25050 Query 48417 GATATCGTGACGCGGATTGGTCCGCTTGGCGGTGTTGCCGGAGTGGCATCCGGCGAAATT 48476 | |||||||| || || ||| | |||| || ||||| || | || | | Sbjct 25051 GCCATCGTGACAGCCATCGGCCCGTTGGGCGAGGTGGCCGGGGTCAACGCTGGGCAGCTC 25110 Query 48477 GCCGCGATGGGCGCCACCATTGCCGGGATGGGGGTTGAATCAGAAATTGCCTCAACCGGC 48536 || |||||||| | | | |||||| |||| | | || | || | |||||| Sbjct 25111 GCGGCGATGGGGTCGGCTCTGGCCGGGGTGGGAATCGGCCAGGAGGTGGCAGCCACCGGC 25170 Query 48537 ATCAAAAACTTCATGCTGTCGCTTACGGCGGGTAAATCCGCAACTAAGTCTCAGAAAGAA 48596 ||||||||||| |||||| |||| | || || | | || |||||||| ||||||||| Sbjct 25171 ATCAAAAACTTTATGCTGACGCTGAGCGCCGGCACGGCGGCTACTAAGTCGCAGAAAGAA 25230 Query 48597 GCCTTAAGAGCGCTGCGG 48614 || || | ||| ||||| Sbjct 25231 GCGTTCAAGGCGTTGCGG 25248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247457604049264