Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24] 7,510 sequences; 92,836,338 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq7237 179 3e-40 seq2592 113 4e-20 >seq7237 Length=102105 Score = 179 bits (198), Expect = 3e-40 Identities = 470/722 (65%), Gaps = 54/722 (7%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 || |||||||| |||||||| || ||||| || || | | ||||| ||| || Sbjct 85647 GGGCACTTGTGCGGACACATGAGGGACCACTCCTTGTCGTCCTTGACACGCTCCATGAAC 85706 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCA-ATGCCGTG 66405 | || || |||||||| |||||||||||||||| || || | |||||| || | ||| Sbjct 85707 AAGTCGGGGATCCAGAGCCCGTAGAAGAGATCGCGAGCGCGCTCCTCCTCCGATCCGGTG 85766 Query 66406 ATTTTTGCGCAAGTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 | | | || || |||||||| |||||||| || |||||||| || | |||||||| Sbjct 85767 TTCCT--CTTCAGACGCAGGAACTCGAAGATGTCCGCGTGCCATGGCTCGATGTAGATGG 85824 Query 66465 CGAACGAGCCC---------------------ATA------CGT---------------- 66481 |||| | || ||| ||| Sbjct 85825 CGAAGGCTCCAGGACGCTGGAAACATTCAAGAATAAGAACTCGTCAAGGCACCAAATCCT 85884 Query 66482 ---TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538 ||| || ||||||||||||||||||||| |||||| |||| |||| ||| || Sbjct 85885 ACCTTGTTTCCTCCTTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGA 85944 Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598 | ||| ||||| || |||| ||||| || ||||| | | ||| || || || | Sbjct 85945 ATGAGTCCGTTGGAGGTGCCGTTGGTCCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAG 86004 Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC--ACTG 66656 || ||||| || || || || ||||| | ||| ||||| ||| || | ||| | | Sbjct 86005 TGGACATTGAGGCCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCA--CTGCCAGAGGG 86062 Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716 || ||| |||||||| |||||||| | | ||||| || ||| |||| || || | | Sbjct 86063 TCTTGAAGATGCCGTCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGAGCTCATCT 86122 Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776 |||| ||| ||| |||| |||||| || || | || || || || | | | Sbjct 86123 GGGGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCACCGCTCGG 86182 Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836 ||||| ||||| || |||||| | || | |||| ||| || || |||| || Sbjct 86183 ACATGAGGTTGTAGGTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTCCGACGGCCA 86242 Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896 |||||||| | | ||| || ||||| || | | | | ||| | | | ||||| Sbjct 86243 CGCGCATCAGCATATGTTGGGGTCGTTCCACGACCTTCCCGTCGATCTTGAGGAGGTAGG 86302 Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGG 66956 |||| ||||||||||||| || ||||| | ||| ||||| ||| | | ||||||| Sbjct 86303 AGCGCTCCAGGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTCGCGGTCGTAGACGATGG 86362 Query 66957 CC 66958 || Sbjct 86363 CC 86364 Score = 91.5 bits (100), Expect = 1e-13 Identities = 142/203 (70%), Gaps = 0/203 (0%) Strand=Plus/Plus Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064 ||||| | || || |||||||| || |||| || ||||| | | |||| ||| || Sbjct 85316 AGGGCGACGGAGGCCAGGTTGCACACGGCTACTTCTTCAGGCGAAGAGTACTGGACGATC 85375 Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124 |||||||| || || ||| || || || | |||| || || ||| | ||| Sbjct 85376 TCGGTGCAGAGGTTGGAGCACTTGATCGTCCCGAGGTTCTTCTGGTTGGACTTCTGGTTG 85435 Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184 || || |||||||| | |||||| ||||||||||| || | || ||| | ||| | Sbjct 85436 CAGGCGTCCTTGTAGAGCATGTAAGGAGTGCCGGTTTCGATCTGCGACGTGACGATCTCC 85495 Query 66185 TGCCAAAGAGCGCGTGCCTTCAC 66207 | |||||| ||||| |||||||| Sbjct 85496 TCCCAAAGGGCGCGGGCCTTCAC 85518 >seq2592 Length=18905 Score = 113 bits (124), Expect = 4e-20 Identities = 114/144 (79%), Gaps = 6/144 (4%) Strand=Plus/Minus Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 ||| |||| ||||| ||||| |||||||| |||||||| ||||| | |||| || ||| Sbjct 15603 GTGCTGGCCTTCTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCGTGGAGCGCTTC 15544 Query 61267 GCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | |||||||| |||| || | ||||||| | |||||| |||||||||| || || | Sbjct 15543 ACCCAGGAGGT-CAAGATGCCCGAGGCGCTCTCCTTCTACAGCTTCCAGATCGC--TGTA 15487 Query 61326 GAATG--TCCACTCGGAGATGTAC 61347 ||| | ||||||||||||||||| Sbjct 15486 GAAGGCATCCACTCGGAGATGTAC 15463 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397531611346400