Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Steinernema_20glaseri_20[genbank_20GCA_5F000757755.1_202014-09-24]
7,510 sequences; 92,836,338 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq7237 179 3e-40
seq2592 113 4e-20
>seq7237
Length=102105
Score = 179 bits (198), Expect = 3e-40
Identities = 470/722 (65%), Gaps = 54/722 (7%)
Strand=Plus/Plus
Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346
|| |||||||| |||||||| || ||||| || || | | ||||| ||| ||
Sbjct 85647 GGGCACTTGTGCGGACACATGAGGGACCACTCCTTGTCGTCCTTGACACGCTCCATGAAC 85706
Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCA-ATGCCGTG 66405
| || || |||||||| |||||||||||||||| || || | |||||| || | |||
Sbjct 85707 AAGTCGGGGATCCAGAGCCCGTAGAAGAGATCGCGAGCGCGCTCCTCCTCCGATCCGGTG 85766
Query 66406 ATTTTTGCGCAAGTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464
| | | || || |||||||| |||||||| || |||||||| || | ||||||||
Sbjct 85767 TTCCT--CTTCAGACGCAGGAACTCGAAGATGTCCGCGTGCCATGGCTCGATGTAGATGG 85824
Query 66465 CGAACGAGCCC---------------------ATA------CGT---------------- 66481
|||| | || ||| |||
Sbjct 85825 CGAAGGCTCCAGGACGCTGGAAACATTCAAGAATAAGAACTCGTCAAGGCACCAAATCCT 85884
Query 66482 ---TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGT 66538
||| || ||||||||||||||||||||| |||||| |||| |||| ||| ||
Sbjct 85885 ACCTTGTTTCCTCCTTGGTCGACGTAGCGAGCGGTGTTGTTGTAGACCCGCAGCATAGGA 85944
Query 66539 ACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCG 66598
| ||| ||||| || |||| ||||| || ||||| | | ||| || || || |
Sbjct 85945 ATGAGTCCGTTGGAGGTGCCGTTGGTCCCAGCGATGAGAGTTCCGGAGGCTCGAATGCAG 86004
Query 66599 TGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC--ACTG 66656
|| ||||| || || || || ||||| | ||| ||||| ||| || | ||| | |
Sbjct 86005 TGGACATTGAGGCCGATTCCGCCGGCGGACTTGGAGATCAGAGCGCA--CTGCCAGAGGG 86062
Query 66657 TCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTT 66716
|| ||| |||||||| |||||||| | | ||||| || ||| |||| || || | |
Sbjct 86063 TCTTGAAGATGCCGTCGATGGAGTCGTCACTCATGGTGAGCAGGAAGCAGGAGCTCATCT 86122
Query 66717 GGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAG 66776
|||| ||| ||| |||| |||||| || || | || || || || | | |
Sbjct 86123 GGGGCTTGCAGGTGCCGGCGTTGAAGAGCGTCGGCGAGGCATGGGTGAACCACCGCTCGG 86182
Query 66777 ACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGCAC 66836
||||| ||||| || |||||| | || | |||| ||| || || |||| ||
Sbjct 86183 ACATGAGGTTGTAGGTTTCGATGGCGGCGTTGATGTCTTCCTTGTGGATTCCGACGGCCA 86242
Query 66837 ATCGCATCAGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGG 66896
|||||||| | | ||| || ||||| || | | | | ||| | | | |||||
Sbjct 86243 CGCGCATCAGCATATGTTGGGGTCGTTCCACGACCTTCCCGTCGATCTTGAGGAGGTAGG 86302
Query 66897 AGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCGTTAGCATGCACGATGG 66956
|||| ||||||||||||| || ||||| | ||| ||||| ||| | | |||||||
Sbjct 86303 AGCGCTCCAGGGTCTTGAAGCCGAAGTAGGTGTAGTTGAAGTCGCGGTCGTAGACGATGG 86362
Query 66957 CC 66958
||
Sbjct 86363 CC 86364
Score = 91.5 bits (100), Expect = 1e-13
Identities = 142/203 (70%), Gaps = 0/203 (0%)
Strand=Plus/Plus
Query 66005 AGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTATACTCGACAATT 66064
||||| | || || |||||||| || |||| || ||||| | | |||| ||| ||
Sbjct 85316 AGGGCGACGGAGGCCAGGTTGCACACGGCTACTTCTTCAGGCGAAGAGTACTGGACGATC 85375
Query 66065 TCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTG 66124
|||||||| || || ||| || || || | |||| || || ||| | |||
Sbjct 85376 TCGGTGCAGAGGTTGGAGCACTTGATCGTCCCGAGGTTCTTCTGGTTGGACTTCTGGTTG 85435
Query 66125 CATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCG 66184
|| || |||||||| | |||||| ||||||||||| || | || ||| | ||| |
Sbjct 85436 CAGGCGTCCTTGTAGAGCATGTAAGGAGTGCCGGTTTCGATCTGCGACGTGACGATCTCC 85495
Query 66185 TGCCAAAGAGCGCGTGCCTTCAC 66207
| |||||| ||||| ||||||||
Sbjct 85496 TCCCAAAGGGCGCGGGCCTTCAC 85518
>seq2592
Length=18905
Score = 113 bits (124), Expect = 4e-20
Identities = 114/144 (79%), Gaps = 6/144 (4%)
Strand=Plus/Minus
Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266
||| |||| ||||| ||||| |||||||| |||||||| ||||| | |||| || |||
Sbjct 15603 GTGCTGGCCTTCTTCGCCGCCTCGGACGGGATCGTCAACGAGAACCTCGTGGAGCGCTTC 15544
Query 61267 GCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325
| |||||||| |||| || | ||||||| | |||||| |||||||||| || || |
Sbjct 15543 ACCCAGGAGGT-CAAGATGCCCGAGGCGCTCTCCTTCTACAGCTTCCAGATCGC--TGTA 15487
Query 61326 GAATG--TCCACTCGGAGATGTAC 61347
||| | |||||||||||||||||
Sbjct 15486 GAAGGCATCCACTCGGAGATGTAC 15463
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397531611346400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |