Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq2527 194 1e-44 seq2468 123 2e-23 seq6327 96.9 3e-15 >seq2527 Length=10055 Score = 194 bits (214), Expect = 1e-44 Identities = 410/601 (68%), Gaps = 13/601 (2%) Strand=Plus/Plus Query 61213 GCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT-ATTGGAACGTTTCGCGCA 61271 || || ||||| ||||| || || ||||| ||||| ||| | |||||| ||||| | || Sbjct 5139 GCATTTTTTGCAGCTTCAGATGGAATCGTAAATGAAAATCTCATTGGA-CGTTTTACACA 5197 Query 61272 GGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA--GAAT 61329 || ||| | || | ||||| | | ||||||| || |||||||| |||| |||| Sbjct 5198 AGAAGTGAAGATGCCTGAGGCACTCTCTTTCTACAATTTTCAGATTGCAGTGGAAGGAAT 5257 Query 61330 GTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAACGT 61389 ||||| || ||||| | ||||| |||||||| | || | | |||| Sbjct 5258 T--CACTCTGAAATGTATTCGAAATTGATCGAAACGTACATTAACGATCCAGTCGAACAA 5315 Query 61390 GAACGATTGTTCAATGCCATCGA-GACGATACCGGCGGTGAAGCGGAAAGCGGATTGGGC 61448 | | | ||||| || || | ||| | ||| | || |||||| |||||| | Sbjct 5316 AATACACTCTTCAACGCAATTCACGACTTT-CCGTATATAAAAAAGAAAGCAGATTGGAC 5374 Query 61449 C-TTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCGG 61507 |||||| |||| | || | ||| ||||||| || | | |||||||| | Sbjct 5375 AATTCAAT-GGATTGAAAATAAGAATGCTTCATTTGGGATGCGTGTTGTTGCATTTGCTG 5433 Query 61508 TGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGTG 61567 || || || | |||||| ||| |||||||| ||||| |||||| |||||||||||| Sbjct 5434 CAGTGGAAGGAATCTTTTTCTCTGGCTCGTTTGCTGCAATTTTTTGGCTGAAGAAACGTG 5493 Query 61568 GACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCATT 61627 |||||||||| ||| |||| ||| || ||||| || ||| | || || || | ||| Sbjct 5494 GACTTATGCCGGGTTTGACACACAGTAACGAGTTAATTTCAAGAGATGAAGGACTCCATC 5553 Query 61628 GTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGCGTG 61687 | |||||||| |||| | | ||| ||||| | | || | || |||| | Sbjct 5554 GAGATTTTGCGTGTTTGGTGTACAA---GTATCTCGAACAAAAACCAACAGAAGAGCAAG 5610 Query 61688 TGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTTTGC 61747 || |||| ||| | ||||| || || ||||||||||| | ||| || || ||| | | Sbjct 5611 TGTGTGAAATTATACGTGAAGCTGTTCAAATCGAACAGGAGTATCTAACCGAAGCTCTTC 5670 Query 61748 CCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTGCCG 61807 | || | || || ||||||||| |||| |||||||| |||||||||| |||||| | Sbjct 5671 CAGTGGATATGATTGGTATGAATTGTCGACTCATGTCGCAATATATTGAATATGTTGCTG 5730 Query 61808 A 61808 | Sbjct 5731 A 5731 >seq2468 Length=4028 Score = 123 bits (136), Expect = 2e-23 Identities = 404/619 (65%), Gaps = 23/619 (4%) Strand=Plus/Minus Query 61206 TGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTT 61265 ||| |||||||| ||||| ||||| || || ||||| || || ||| | | || || || Sbjct 3543 TGTTTTGGCGTTTTTTGCTGCTTCAGATGGAATCGTAAACGAAAATCTCGTTGAGCGATT 3484 Query 61266 CGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGA 61325 | ||||| ||| | || | || |||| | |||||| | |||||||||||| | || Sbjct 3483 TACACAGGAAGTGAAGATGCCTGAAGCGCTCTCGTTCTACAGTTTCCAGATTGCCGTCGA 3424 Query 61326 --GAATGTCCACTCGGAGATGTA--CAGTGTTCTCATCGATACGTACATCAGGGAGC--- 61378 |||| || || |||||||| || | | ||||| | ||| | | || | Sbjct 3423 AGGAATT--CATTCCGAGATGTATTCAAAGATG--ATCGAAGCATACGTTACCGATCTAA 3368 Query 61379 --GGGCGGAACGTGAACGATTGTTCAATGCCAT-CGAGACGATACCGGCGGTGAAGCGGA 61435 | | ||||| ||| | || ||||| || | ||| | || || | ||| || Sbjct 3367 CTGAGAGGAAC----ACGCTCTTT-AATGCTATTCAAGAGTTTCCCTGCATT-AAGAAGA 3314 Query 61436 AAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGC 61495 |||| || ||||| || ||||| || | ||| | ||||| || || Sbjct 3313 AAGCCGACTGGGCTCTCCGATGGATTGGAGATAAGAATGCTTCGTTTGGAATTCGCGTGA 3254 Query 61496 TGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGT 61555 | || ||||| | || || || | |||||| ||||||||||| || || ||||||| Sbjct 3253 TCGCTTTTGCTGCCGTGGAAGGAATCTTTTTCTCCGGATCGTTTGCTGCCATTTTTTGGT 3194 Query 61556 TGAAGAAACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACG 61615 ||||||| |||||||| ||||| || |||| ||||||||| | || ||||| || | Sbjct 3193 TGAAGAAGCGTGGACTCATGCCTGGGTTGACTCACAGCAATGAACTAATTTCACGAGATG 3134 Query 61616 AGGGCATGCATTGTGATTTTGCTGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGT 61675 | || | ||| | ||||| || |||| | | |||| || || | | || Sbjct 3133 AAGGACTCCATCGAGATTTCGCATGTTTGATGTACAAA---TACCTTGACCAGAAGCCTA 3077 Query 61676 CGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGA 61735 | |||| ||| ||| || | || || || || ||| || || |||| || | Sbjct 3076 GCAACGAGCAAGTGTATGAAATCATACGGGAAGCTGTGCATATAGAGCAAGAATACCTCA 3017 Query 61736 CTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTG 61795 | || | | || ||| | ||||| |||||||||| || ||||| |||| || | Sbjct 3016 CCGAGTCCCTTCCTGTCGACATGATCGGTATGAATTGTGTTCTCATGTCCAAGTACATCG 2957 Query 61796 AATTTGTTGCCGACCGTCT 61814 ||| |||||| || | ||| Sbjct 2956 AATATGTTGCTGATCATCT 2938 >seq6327 Length=14581 Score = 96.9 bits (106), Expect = 3e-15 Identities = 297/455 (65%), Gaps = 6/455 (1%) Strand=Plus/Minus Query 66488 CCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCG 66547 || ||||| |||||||| ||||| ||| ||| | || || | ||| || | | || Sbjct 4555 CCGCCTTGATCGACGTAACGAGCAGTATTATTGTACACTCGGAGCATAGGGATTAAACCA 4496 Query 66548 TTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTC 66607 || ||| | |||||||| || |||| | ||| ||| || || || |||| Sbjct 4495 TTCGATGTTCCATTGGTTCCAGCGATCATTGTTCCAGATGCGCGAATGCAATGCGCATTT 4436 Query 66608 AGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCC--ACTGTCCGGAATA 66665 |||||||||||||| || | |||||| || ||||| | ||| | || | | | Sbjct 4435 AGACCAATACCACCTGCTGACTTCGAAATAAGGGCACA--CTGCCAGAGAGTTTTGTAAA 4378 Query 66666 TGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTGGGGTTTGG 66725 | || ||||| || || | | || ||||||||| |||| || || | ||| |||||| Sbjct 4377 TCCCATCAATTGAATCGTCATGCATCGTCAGGAGGAAGCAAGAGCTCATTTGTGGTTTGC 4318 Query 66726 GTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGAGACATGTAAT 66785 || | || ||| || || || | ||| || || || | | ||||| ||| Sbjct 4317 AAGTTCCTGCATTGAAAAGTGTAGGAGAAGCATGAGTGAACCAGCGCTCGGACATCAAAT 4258 Query 66786 TGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGAATCCCGAGTGC-ACATCGCATC 66844 |||| || ||||| | ||||| || | ||| ||||| || | || ||| ||||| Sbjct 4257 TGTAGGTTTCGATAGCGGCATCGATATCTTCCTTGTGAATTCCAACAGCGACA-CGCATA 4199 Query 66845 AGGAGGTATTGAGGCCGTTCGACCAGCCGATCCTTGATATGCATTAAGTAGGAGCGTTCC 66904 || | | |||||| || ||||| | | | | | || | | || || || || ||| Sbjct 4198 AGCAAATGTTGAGGACGCTCGACAACCTGTCCATCCATTTTTAACAAATATGACCGCTCC 4139 Query 66905 AGGGTCTTGATACCAAAGTACGAGTAATTGAAATC 66939 | || |||| ||| || || | ||| |||||| Sbjct 4138 AAAGTTTTGAAACCGAAATATGTGTATGAGAAATC 4104 Score = 96.9 bits (106), Expect = 3e-15 Identities = 227/343 (66%), Gaps = 0/343 (0%) Strand=Plus/Minus Query 65198 GCCACATGCATATTCAACGACTGACTCTGATCGATGTAACGACCACGATCTGCAGCCATG 65257 |||| ||| ||||| | ||||| ||| || ||| | ||||| || |||||||| Sbjct 8331 GCCATATGAATATTAAGAGACTGCGACTGGTCAATGAAGGCCCCACGGTCAGCAGCCATT 8272 Query 65258 TCAATGATACGACGTCCCGATATCTCCCAGACGGTCTTGTACAGGCGACGTACCTCAATT 65317 ||||||||| | || || ||||| || |||||||||||| | | || || Sbjct 8271 TCAATGATATCCTTTTGAGAAATTTCCCATACAGTCTTGTACAGGTTTTGCAAGTCCTTT 8212 Query 65318 GGAATCTCCTCAATGTCCTGGACTGAACCACGACGTGCAATAATGCGATTACGCATCGAC 65377 ||||| || | || | |||| || |||| | ||||| || | ||| || Sbjct 8211 GGAATTTCAGCGATTCCTTGGATCGATCCACTCTGCGCAATGATTCTATTTTTCAGATTG 8152 Query 65378 TCTGACCACAAACCCAAATCGATAAGATGTTGAACCAAGTGACGATTGATGACTTGGAAC 65437 || ||| || | || | |||| | | || || |||| | | |||||| Sbjct 8151 TCGTTCCATAAGTTAAGTTCAACGAGATCCTTCAGCAGATGGGGATTAACAATTTGGAAT 8092 Query 65438 TCGCCGGACAGTACACGACGGACATAGATGTTGGACGTGATGGGTTCAAAGGATTCAGTG 65497 || ||||| | || || || |||||||||||||||| ||| || | |||||| || Sbjct 8091 TCACCGGATAAAACGCGTCGAGTATAGATGTTGGACGTGTAGGGCTCGATCGATTCATTG 8032 Query 65498 TTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCATGGGAGCGA 65540 || || |||||||| || || || || |||||||| || |||| Sbjct 8031 TTTCCCAGAATTTGAGCTGTGGAAGCCGTTGGCATTGGGGCGA 7989 Score = 86.0 bits (94), Expect = 5e-12 Identities = 134/189 (71%), Gaps = 2/189 (1%) Strand=Plus/Minus Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 |||| ||||||||||| |||||||| || |||||||| ||| | || || || | Sbjct 6189 AGACCAGGACACTTGTGCGGACACATAAGAGACCAATCCTTATCTTCTTTCACGCGCTCC 6130 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCT-CAAT 66399 || || | |||||| ||||| | || || || ||||| || || || | || | | || Sbjct 6129 ATGAACAAATCAGGAATCCACAATGCATAAAACAGATCCCGAGCGCGCTCTTCTTCCGAT 6070 Query 66400 GCCGTGATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 | || |||||| || |||||| || || || || |||||||| ||||| | ||| Sbjct 6069 CCAGT-ATTTTTCTTTAATCTGAGGAATTCGAAAATATCAGCATGCCAAGGTTCAACGTA 6011 Query 66460 GATGGCGAA 66468 || ||||| Sbjct 6010 AATAGCGAA 6002 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397498943929280