Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20monticolum_20[genbank_20GCA_5F000505645.1_202013-12- 12] 14,252 sequences; 89,158,954 total letters Query= NC_031940.1 Length=77375 Score E Sequences producing significant alignments: (Bits) Value seq9889 242 2e-59 seq12872 140 2e-28 >seq9889 Length=1737 Score = 242 bits (268), Expect = 2e-59 Identities = 253/331 (76%), Gaps = 1/331 (0%) Strand=Plus/Plus Query 39581 AACGC-ATTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGACACGGTGTACAGCG 39639 ||||| ||| ||||||| | |||||||| |||||||| |||||||||||||| ||||||| Sbjct 286 AACGCCATTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCG 345 Query 39640 TCGAGAAAAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCG 39699 | ||| | || ||| |||| || | ||||| || || ||||||||||||| ||||| Sbjct 346 TTGAGCAGAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATC 405 Query 39700 TTCTGACTGTTACCGCTGGTGCGGAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAG 39759 | ||||| || || | || || || || ||||| ||||||||||| || || |||||| Sbjct 406 TGCTGACCGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAAC 465 Query 39760 CGGCGAACAAAATCAGCCCGGTCAGTGAGTCACCCATCGACCCCTTCGGGGCGACCGGGC 39819 ||| | | | | |||||||| ||| | || || || |||||||||||||| || Sbjct 466 TGGCCTGCCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGAT 525 Query 39820 TGTCGCATGACCTTGCTGATGAAGACCTGAACCCCATCACCATCATTCAGAACTACACCA 39879 |||| |||| | || ||||||| | | ||||| |||| ||| | ||||||| ||| Sbjct 526 TGTCCCATGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCC 585 Query 39880 ACATGTCCGATCCGATGAAAGAGCTGGAAGC 39910 ||||| ||| |||||||| ||||||||||| Sbjct 586 ACATGAGCGACCCGATGAAGGAGCTGGAAGC 616 Score = 239 bits (264), Expect = 2e-58 Identities = 248/324 (77%), Gaps = 1/324 (0%) Strand=Plus/Plus Query 1 TTACTACAGTGTGGCCCCGCGTTTCTGGGTACCGTATGACACGGTGTACAGCGTCGAGAA 60 || ||||||| | |||||||| |||||||| |||||||||||||| |||||||| ||| | Sbjct 293 TTTCTACAGTATTGCCCCGCGGTTCTGGGTGCCGTATGACACGGTCTACAGCGTTGAGCA 352 Query 61 AAATGAAGATCGCCGGACAGCCGAACGCTTTCAGAAATGGGTGGAAATGGGCGTTCTGAC 120 || ||| |||| || | ||||| || || ||||||||||||| ||||| | ||||| Sbjct 353 GAACGAAAATCGGCGCAGTGCCGAGCGTTTCCAGAAATGGGTGGCAATGGATCTGCTGAC 412 Query 121 TGTTACCGCTGGTGCGGAGGTGGATTATCGCTACATCCTCGAGGAGGCCAAAGCGGCGAA 180 || || | || || || || ||||| ||||||||||| || || |||||| ||| Sbjct 413 CGTCACGGAAGGCGCTGAAGTCGATTACCGCTACATCCTTGAAGAAGCCAAACTGGCCTG 472 Query 181 CAAAATCAGCCCGGTCAGTG-AGCACCCATCGACCCCTTCGGGGCGACCGGGCTGTCGCA 239 | | | | |||||||| || ||| || || || |||||||||||||| || |||| || Sbjct 473 CCACCTGAACCCGGTCAATGAAGCGCCGATTGATCCCTTCGGGGCGACGGGATTGTCCCA 532 Query 240 TGACCTTGCTGATGAAGACCTGAACCCCATCACCATCATTCAGAACTACACCAACATGTC 299 || | || ||||||| | | ||||| |||| ||| | ||||||| ||| ||||| Sbjct 533 TGCGTTGGCGGATGAAGGCATTAACCCGATCATCATTACCCAGAACTTTACCCACATGAG 592 Query 300 CGATCCGATGAAAGAGCTGGAAGC 323 ||| |||||||| ||||||||||| Sbjct 593 CGACCCGATGAAGGAGCTGGAAGC 616 Score = 168 bits (186), Expect = 3e-37 Identities = 150/188 (80%), Gaps = 0/188 (0%) Strand=Plus/Plus Query 39381 GTCTTTAAAACAAAACACCTCAATATCTGGGTGTCGGCGCGTTCGGCGTATTTCAACCTG 39440 ||||||||||| || ||||| ||||||||||| || || || |||||| ||||| || Sbjct 17 GTCTTTAAAACCAAGCACCTGAATATCTGGGTCTCCGCCCGAGAGGCGTACTTCAATATG 76 Query 39441 GTGAGCTGGCAGAGCTGCGAGGATAAATCACTGACCCTTGAGCAGTTCGAGGGGCAGCCG 39500 ||||||||| | ||||| || | || ||||| || || ||||||||||| || || Sbjct 77 GTGAGCTGGAAACAGTGCGAAGACACGTCGCTGACACTGGAACAGTTCGAGGGACAACCC 136 Query 39501 TGCATTCTGGCCTTTGACCTGGCGCGTAAGCTGGATATGAACAGCATGGCGCGACTTTAT 39560 || |||||| ||||||||||| ||||||||||| |||||||||||||| || |||| | Sbjct 137 TGTTATCTGGCGTTTGACCTGGCCCGTAAGCTGGACATGAACAGCATGGCCCGGCTTTTT 196 Query 39561 ACCCGCGA 39568 ||||| || Sbjct 197 ACCCGTGA 204 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 355 GGCAATCCCATCATGACCTGGTGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGTAAC 414 ||||| || || ||| |||||||||| |||||||| || || ||||| | || || Sbjct 676 GGCAACCCGATTATGGCCTGGTGTATTGGCAACGTGGTGGGGAAAACGCTGGGCGGGAAT 735 Query 415 GATGATGTGGTGAAGCCTGTCAAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCA 474 ||||| | ||| ||| ||||||||||| ||| | ||||| || || || || || Sbjct 736 GATGACATTGTGCGGCCCATCAAGGAGCAGAAGGACAGCAAAATTGACGGCGCGGTGGCC 795 Query 475 CTGATTATGGCGGTTGGCAGAGCCATGCTG 504 ||||| |||||| | || | || || ||| Sbjct 796 CTGATAATGGCGATGGGGCGCGCTATCCTG 825 Score = 82.4 bits (90), Expect = 4e-11 Identities = 108/150 (72%), Gaps = 0/150 (0%) Strand=Plus/Plus Query 39942 GGCAATCCCATCATGACCTGGTGTATCGGCAACGTAGTCGGCAAAACCATTCCGGGTAAC 40001 ||||| || || ||| |||||||||| |||||||| || || ||||| | || || Sbjct 676 GGCAACCCGATTATGGCCTGGTGTATTGGCAACGTGGTGGGGAAAACGCTGGGCGGGAAT 735 Query 40002 GATGATGTGGTGAAGCCTGTCAAGGAGCAGGCGGAAAATAAAATCGATGGTGCAGTTGCA 40061 ||||| | ||| ||| ||||||||||| ||| | ||||| || || || || || Sbjct 736 GATGACATTGTGCGGCCCATCAAGGAGCAGAAGGACAGCAAAATTGACGGCGCGGTGGCC 795 Query 40062 CTGATTATGGCGGTTGGCAGAGCCATGCTG 40091 ||||| |||||| | || | || || ||| Sbjct 796 CTGATAATGGCGATGGGGCGCGCTATCCTG 825 >seq12872 Length=1234 Score = 140 bits (154), Expect = 2e-28 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 46841 GCTAATGATGGTACGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGT 46900 || || || ||||| | ||||| | || ||| || |||||||| || ||||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 46901 GGTGAGCTGGGATCAACATATCGCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGAT 46960 || |||||| | | ||| || || | ||||| | ||||| || || ||| |||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 46961 CTGTTCCAGCAACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTG 47020 |||| | | || ||||| || |||||| |||||| ||| ||||||||||| | ||| Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 47021 CTGTTTCCGCCTGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGT 47080 |||||||||||||| || || ||||| || ||||| || |||| |||||||||| Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGCGCTGCTGTACCAGTTCCGC 802 Query 47081 CTGCAGTACAGCGAGGAGGC 47100 ||||||||| ||| | ||| Sbjct 801 CTGCAGTACCCCGACGCGGC 782 Score = 140 bits (154), Expect = 2e-28 Identities = 187/260 (72%), Gaps = 0/260 (0%) Strand=Plus/Minus Query 7252 GCTAATGATGGTACGCGTTTCGGGTCTGGTCAGGCCATTGTCACGCCTGCCGTTATCCGT 7311 || || || ||||| | ||||| | || ||| || |||||||| || ||||| Sbjct 1041 GCCAACGACGGTACCAGCTTCGGCGCCGGCGCGGCGATCGTCACGCCGATTGTGATCCGG 982 Query 7312 GGTGAGCTGGGATCAACATATCGCCAGATGGAGCGGGAAGGCATCGTGGAAAACTTCGAT 7371 || |||||| | | ||| || || | ||||| | ||||| || || ||| |||| Sbjct 981 GGCGAGCTGATCGCGGCGTATGGCGAGCTTGAGCGCGCCGGCATTGTCGAGAACATCGAG 922 Query 7372 CTGTTCCAGCAACATCTGATAGTTGAGCGTAACGCGAACAATTCGAACCGCCTGGATGTG 7431 |||| | | || ||||| || |||||| |||||| ||| ||||||||||| | ||| Sbjct 921 GCGTTCAAAGAGCACCTGATTGTCGAGCGTGACGCGAGCAACCCGAACCGCCTGAACGTG 862 Query 7432 CTGTTTCCGCCTGATTATGTCAATCAGTTACGTGTGTTTGCAGTGCTTAACCAGTTCCGT 7491 |||||||||||||| || || ||||| || ||||| || |||| |||||||||| Sbjct 861 CTGTTTCCGCCTGACCTGGTTAACCAGTTGCGCGTGTTCGCGCTGCTGTACCAGTTCCGC 802 Query 7492 CTGCAGTACAGCGAGGAGGC 7511 ||||||||| ||| | ||| Sbjct 801 CTGCAGTACCCCGACGCGGC 782 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 247432214485792