Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1889 150 1e-31 seq4 120 2e-22 >seq1889 Length=309471 Score = 150 bits (166), Expect = 1e-31 Identities = 461/711 (65%), Gaps = 69/711 (10%) Strand=Plus/Plus Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 |||||||| || || ||||||| ||||| || |||| | ||||| ||| || Sbjct 14910 GGACACTTATGAGGGCACATCAAAGACCACTCTTTGTCCTCCTTGACACGTTCCATGAAG 14969 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCA-ATGCCGTG 66405 || ||||| ||||| ||| |||||||||| ||||| || || | || || || | ||| Sbjct 14970 AGGTCAGGGATCCACAGGCCGTAGAAGAGGTCGCGGGCGCGCTCTTCTTCGGATCCAGTG 15029 Query 66406 ATTTTTGCGCAAGTCG-AGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGG 66464 ||| || || || |||||||| || |||||||| |||||||| || | |||||||| Sbjct 15030 --TTTCGCTTGAGGCGCAGGAACTCGAAAATGTCGGCGTGCCATGGCTCGACGTAGATGG 15087 Query 66465 CGAACGAGCC----------------------------------------CAT--ACGT- 66481 | |||| || ||| || | Sbjct 15088 CAAACGCTCCGGGGCGCTAAAAAGGTATGCTTATAGATGGTGAGCTGAAACATGGACATA 15147 Query 66482 --TTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTA 66539 ||| ||| ||||| |||||||||||||| |||||| | || || | ||| || | Sbjct 15148 CCTTGTTGCCTCCTTGATCGACGTAGCGAGCCGTGTTGTTGTACACTCGGAGCATGGGGA 15207 Query 66540 CGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGT 66599 || ||||| || |||| ||||| || | || || ||| || || || || Sbjct 15208 TCAGGCCGTTGGAGGTGCCGTTGGTTCCCGCAATCATGGTTCCCGAGGCGCGAATGCAGT 15267 Query 66600 GAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCACAATCGGCCACTG--T 66657 | | || || || || || ||||||| ||| ||||| || || | |||| | | Sbjct 15268 GCGCGTTGAGTCCGATGCCTCCGGCCGACTTGGAGATCAAGGCGCACT--GCCAGAGGGT 15325 Query 66658 CCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAGCATGAACTAAGTTG 66717 | ||| |||||||| ||||||||| | | || || || ||| |||| ||||| | || Sbjct 15326 CTTGAAGATGCCGTCGATGGAGTCATCGTGCATTGTGAGAAGGAAGCAGGAACTCATCTG 15385 Query 66718 GGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTAAAGTAATGGCGA-- 66775 ||| ||| || |||| |||||||||||| | ||||| || || | |||| Sbjct 15386 GGGCTTGCAGGTTCCGGCGTTGAAGAGGGTGGGCGATGCGTGGGTGAACCA---GCGATC 15442 Query 66776 -GACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCAT-GAATCCCGAGTG 66833 |||||| ||||| || |||||| |||| || |||| || | || |||| | Sbjct 15443 CGACATGAGGTTGTAGGTTTCGATGGCAGCGTCGATGTCCTCCTTGTGGACTCCCACGGC 15502 Query 66834 CACATCGCATCAGGAGGTATTGAGGCCGTTC---GACC-AGCCGATCCTTGATATGCATT 66889 |||| ||||| || | || ||| || || || |||| |||| ||||| | || Sbjct 15503 CACA-CGCATAAGCATGTGTTGGGGACGCTCAGTGACCTTGCCG----TTGATCTTCAGC 15557 Query 66890 AAGTAGGAGCGTTCCAGGGTCTTGATACCAAAGTACGAGTAATTGAAATCG 66940 ||||| || ||||||||||| || | || || || | ||| ||||||| Sbjct 15558 AAGTACGACCGTTCCAGGGTTTTAAACCCGAAATAGGTGTACGCGAAATCG 15608 Score = 93.3 bits (102), Expect = 3e-14 Identities = 99/131 (76%), Gaps = 0/131 (0%) Strand=Plus/Plus Query 65413 CAAGTGACGATTGATGACTTGGAACTCGCCGGACAGTACACGACGGACATAGATGTTGGA 65472 ||||||| | |||| || ||||| |||||||| || ||||||||| ||||||||||| Sbjct 13994 CAAGTGAGGGTTGACGATCTGGAAGTCGCCGGAAAGGACACGACGGCTGTAGATGTTGGA 14053 Query 65473 CGTGATGGGTTCAAAGGATTCAGTGTTGCCTAGAATTTGGGCAGTAGATGCAGTTGGCAT 65532 ||| || || | || || |||| || || ||||| ||||| || || || ||||| Sbjct 14054 GGTGTACGGCTCGATCGACTCGTTGTTTCCGAGGATTTGAGCAGTGGACGCCGTGGGCAT 14113 Query 65533 GGGAGCGACCA 65543 ||||| |||| Sbjct 14114 CGGAGCAACCA 14124 >seq4 Length=195412 Score = 120 bits (132), Expect = 2e-22 Identities = 294/436 (67%), Gaps = 10/436 (2%) Strand=Plus/Plus Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || ||||| ||||||||||| || || || ||||||||||| || | | || |||||| Sbjct 70945 GTTTTGGCTTTCTTTGCCGCCTCCGATGGAATCGTCAATGAAAACCTCGTCGAGCGTTTC 71004 Query 61267 GCGCAGGAGGTGCAAG-TGTCGGAGGCGCGTTGT--TTCTACGGCTTCCAGATTGCCATG 61323 | |||||||| |||| || | || || |||| |||||| |||||||||| ||| | Sbjct 71005 ACCCAGGAGGT-CAAGATGCC--AGAAGCCTTGTCCTTCTACAGCTTCCAGATGGCCGTC 71061 Query 61324 GAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCG 61383 || ||||||||||||||||| | || || | ||| || || | | Sbjct 71062 GAAGGCATCCACTCGGAGATGTACTCCAAGATGATTGAAGCTTACGTCGTCGATCCAAAG 71121 Query 61384 GAACGTGAACGAT-TGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGA 61442 || || |||| | | ||||| |||||| | | | || | ||| ||| ||||| Sbjct 71122 GAGCG-CAACGTTCTTTTCAACGCCATCCACGAGTTCCCTTGCATCAAGAAGAAGGCGGA 71180 Query 61443 TTGGGCCTTCAATTGGATC-ACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCAT 61501 ||||| | |||||| | | | ||| ||| ||||||| || | | || | Sbjct 71181 CTGGGCTCTGCGCTGGATCGGCGACAAGAAC-GCTTCATTTGGAACTCGCGTTATCGCGT 71239 Query 61502 TTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGA 61561 | || | || || || | || ||| ||| ||||| || || ||||||||| | |||| Sbjct 71240 TCGCCGCCGTTGAAGGAATCTTCTTCTCTGGGTCGTTCGCTGCCATCTTTTGGCTCAAGA 71299 Query 61562 AACGTGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCA 61621 | || || || ||||| || || || |||||| || |||| || ||||| || ||| Sbjct 71300 AGCGAGGCCTCATGCCTGGACTCACTCACAGCAACGAACTGATTTCCCGCGATGAAGGCC 71359 Query 61622 TGCATTGTGATTTTGC 61637 | || |||| ||||| Sbjct 71360 TTCACCGTGACTTTGC 71375 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397554122888960