Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_011356.1 Length=54896 Score E Sequences producing significant alignments: (Bits) Value seq2774 221 4e-53 seq2270 150 6e-32 seq2629 145 3e-30 >seq2774 Length=20939 Score = 221 bits (244), Expect = 4e-53 Identities = 363/516 (70%), Gaps = 17/516 (3%) Strand=Plus/Minus Query 42865 AGCCTTATGTTCCTATGAAGCCTGTTGTTGAAGGTATGGGGATGGTTTGGGCTGCTCAAT 42924 |||| || ||||| ||||| ||| | |||||| |||||| | | |||||| | || | Sbjct 509 AGCCATACGTTCCAATGAAACCTATCATTGAAGATATGGGTTTAGATTGGGCGTCGCAGT 450 Query 42925 TTGTTAAGTTAAAACAGAGGTTTGTCAAAGGTATTTCGGAAATCGAAATACCTTCTGCTG 42984 || |||| ||||| | | ||| ||||||||| |||||||| ||||||||| | Sbjct 449 TTACTAAGCTAAAAAAACGCTTTAGTAAAGGTATTGTGGAAATCGCAATACCTTCGAAAG 390 Query 42985 GCGGTAAACAGTTAATGACATGTCTTGCCTTTCGTAAATTTGCGGCTTGGCT---TTCAA 43041 ||||| | || | ||||| || || || | | |||||| | | |||| | ||||| Sbjct 389 GCGGTGAGCAATCAATGATTTGCCTAGCAATGCATAAATTATCAGGTTGGTTATATTCAA 330 Query 43042 GCATTCAACCAAACAAAGTCCGCCCTGAAATCCGCGACAAGGTAATCCAGTATCAGGAAG 43101 || | | |||||||| ||||||||||| ||||| ||||||||||| || |||| Sbjct 329 TAATGC---CTAACAAAGTTAAGCCTGAAATCCGAGACAAAGTAATCCAGTACCAAGAAG 273 Query 43102 AGTGTGACGATGTGCTCTACGAGTACTGGACTAAAGGCCATGTGAT---TAACCCGCGCA 43158 | || ||||| || || || ||||| ||||||| ||| | || | ||| || |||| Sbjct 272 AATGCGACGACGTACTTTATGAGTATTGGACTACTGGCGAAGTTAAAGCTAAACCACGCA 213 Query 43159 AA---GCTAAAAAGGCATTGCCGGGGAAAATCACCACTGAACAGCAGGAAGCCATTAAAC 43215 || | |||| | || || || | | || | |||||||| ||||| ||||| | Sbjct 212 AACAAGTTAAACAA--ATCGCTGGTCGTATT-ACTTCAGAACAGCAAGAAGCAATTAAGC 156 Query 43216 AACTCGTCATGAGTCGCGGTCAGTCTCTGCCAAAAGAAAAACAGGCGAAGGCGATGATCA 43275 ||||||| | | ||||||| | | | || ||||| || || || || || ||||| | Sbjct 155 AACTCGTTTTAAATCGCGGTAAAGCATTACCCAAAGAGAAGCAAGCAAAAGCAATGATAA 96 Query 43276 CCATGTGGTCGTCACTGAAATCTCATTTTGGGTGTTCATACAAAGAAATCAGCGAG-GAG 43334 | || ||||| || || ||| ||||||||| || | ||||||||||| | || || Sbjct 95 CTATTTGGTCATCGCTAAAAAGTCATTTTGGTTGCACGTACAAAGAAAT-TGATAGCGAT 37 Query 43335 CAGTTTACCGAAGCTCTGTCACTTGCTGCTCGCGTT 43370 | || || ||||| | ||||| ||||| || ||| Sbjct 36 AAATTCACAGAAGCATTATCACTGGCTGCGCGTGTT 1 >seq2270 Length=26257 Score = 150 bits (166), Expect = 6e-32 Identities = 231/327 (71%), Gaps = 2/327 (1%) Strand=Plus/Minus Query 46127 AAACCGGCATACAGCAACAACCCGGCCTGGTGCCTGTGGGACATGCTGACTCACCCGCGC 46186 |||||||| |||| ||| |||||||| ||| | | || || |||| || | || Sbjct 5162 AAACCGGCCTACACCAATAACCCGGCGTGGATATTCTACGATTTGGTGACCCATACCCGT 5103 Query 46187 TACGGCATGGGAAAACGCCTGGGGGCGGC-GGATGTGGACAAGTGGGCGCTGTATGCCAT 46245 || ||||| || || | ||||||| || |||| |||||| || ||||||||||| Sbjct 5102 TATGGCATCGGCAAGCTGATGGGGGCATTTGGCTGTG-ACAAGTTCGCCCTGTATGCCAT 5044 Query 46246 TGCGCAGTACTGCGACCAGATGGTCCCTGATGGTTTCGGGGGCACAGAGCCGCGGATGAC 46305 |||||| || || |||||| | || || ||||| || || ||||| || || || | || Sbjct 5043 TGCGCAATATTGTGACCAGCTCGTGCCGGATGGATTTGGTGGCACCGAACCCCGCTTTAC 4984 Query 46306 CTTTAATGCGTACCTGTCACAACAGCGTAAGGCGTGGGACGTTCTCAGTGATTTCTGCTC 46365 || ||||||||| | | | || |||||||| |||| || || |||||| ||| Sbjct 4983 CTGCAATGCGTACATCGCCAATCAACGTAAGGCACGGGATGTGCTGGATGATTTGGCCTC 4924 Query 46366 GGCGATGCGCTGTATGCCGGTATGGAACGGCCAGACGCTGACGTTCGTTCAGGACAGCCC 46425 || | | || |||||| ||| |||||||| | | ||||| | | |||||||| | || Sbjct 4923 GGTGTTTCGGGGTATGCAGGTCTGGAACGGGCTGCAACTGACCTGCTTTCAGGACCGGCC 4864 Query 46426 GTCGGATGTGGTGTGGCCGTACACCAA 46452 | ||| ||| ||| | | |||||| Sbjct 4863 TGCCGATCCGGTCTGGACATTCACCAA 4837 Score = 93.3 bits (102), Expect = 1e-14 Identities = 197/290 (68%), Gaps = 12/290 (4%) Strand=Plus/Minus Query 43937 GAGATTGTGGCACTGGTCCACAGTCATCCCGGTGGTCTGCCCTGGCTGAGCGAGGCCGAC 43996 ||||||| ||| | || ||||| ||||| |||| ||| ||||| | | ||| Sbjct 7023 GAGATTGAGGCCATTGTGCACAGCCATCCTAACGGTCAACCCCATCTGAGTGCCGAAGAC 6964 Query 43997 CGGCGGCTGCAGATAAAAAGTGCACTGTCCTGGTGGCTGGTCTGCCGGG---GGGAAATT 44053 || || | ||||||||||| ||| | |||||| ||||||| | | ||| | Sbjct 6963 CGCCGACAGCAGATAAAAACCAGGCTGCCGTGGTGGTTGGTCTGTGGTGATCGGG---TG 6907 Query 44054 CATAAATTCCGCTGTGTGCCACATCTGACAGGACGGCGC---TTTGAGCACGGGGTGACG 44110 ||| ||||||| ||||| | | | | || ||||| ||| |||||| | | Sbjct 6906 CATCAATTCCGACCGGTGCCGCGTTT-ATTGG--GGCGCGAATTTATCCACGGGTTACAG 6850 Query 44111 GACTGTTACACGCTGTTCCGGGATGCCTACCATCTGGCGGGAATTGATATGCCGGATTTT 44170 || || ||| ||||| ||||||||||||||||||||||||| ||||| | ||| || Sbjct 6849 GATTGCTACTCGCTGATCCGGGATGCCTACCATCTGGCGGGGATTGAGTTAGACGATATT 6790 Query 44171 GAGCGTGAGGATGACTGGTGGCGTAACGGTCAGAACCTTTACCTGGACAA 44220 ||||| || | |||||| | || |||||||| || || || || Sbjct 6789 CCCCGTGATGAAGCATGGTGGAACACGGGGCAGAACCTGTATCTCGATAA 6740 >seq2629 Length=15125 Score = 145 bits (160), Expect = 3e-30 Identities = 244/354 (69%), Gaps = 6/354 (2%) Strand=Plus/Minus Query 18152 GGAGGCTGCTTAAT--GGCTAAACCAGCGCGAAGGAAATGCAAAATCTGTAAGGAATGGT 18209 |||||||| | ||| |||||| ||| |||| || |||||||| |||| || |||| Sbjct 352 GGAGGCTGTTAAATATGGCTAACCCAAGGCGACGGCGCTGCAAAATATGTAGAGAGTGGT 293 Query 18210 TTCACCCGGCATTCTCAAATCAGTGGTGGTGCAGCCCGGAACACGGAACTAAATTAGCGC 18269 |||| || | | |||| |||||| ||||| || |||||| | ||||||| Sbjct 292 TTCATCCCAAGTACGAAAATATAGAGTGGTGTAGCCCAGAGCACGGAGCAGAATTAGCAA 233 Query 18270 TCGAACGACGAAATAAAGAACGCGAAAAGGCGGAAA--AAACAGCAGAGAAGAAACGACG 18327 || | ||||||| ||| || | ||||| ||| |||| ||| ||||| || | Sbjct 232 TCAAGCGACGAAGTAAGGAGAGAGAAAAACTAGAAGCCAAACTCAAGA-AAGAACAGAAG 174 Query 18328 ACGAGAGGAGCAGAAANNNNNNNNNNNNNNNNNGATTCGAAAACTCGCCTTAAAGCCCCG 18387 | || || | || | || || | || |||| ||||| Sbjct 173 CAAAAAGAAGTAAAAGCCCGCGATAAACTCAAAGCC-CGCAAGTTAGCAGTAAAACCCCG 115 Query 18388 CAGTTACTGGATTAAACAAGCCCAACAAGCCGTAAACGCCTTCATCAGAGAAAGAGACCG 18447 |||||| |||||||||||||| ||||||||||| ||||| | ||||||||||||||||| Sbjct 114 CAGTTATTGGATTAAACAAGCACAACAAGCCGTCAACGCATATATCAGAGAAAGAGACCG 55 Query 18448 CGACTTACCATGTATCTCGTGCGGAACGCTCACGTCTGCTCAGTGGGATGCCGG 18501 || || ||||| || || ||||||||| | ||||||||||||||||| || Sbjct 54 TGATTTGCCATGCATATCATGCGGAACGTTTCAATCTGCTCAGTGGGATGCTGG 1 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 175539629694144