Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031264.1 Length=46877 Score E Sequences producing significant alignments: (Bits) Value seq348 98.7 3e-16 >seq348 Length=55286 Score = 98.7 bits (108), Expect = 3e-16 Identities = 184/266 (69%), Gaps = 6/266 (2%) Strand=Plus/Minus Query 3709 GTCGATATCAACTCTCCGGGCGGGGACTTCTTTGAAGGTGTGGCGATCTACAATCTGCTG 3768 |||| ||||||||||||||||| ||| | || ||||| |||| || ||| |||| Sbjct 21440 GTCGCCATCAACTCTCCGGGCGGCGACATGTTCGAAGGACTGGCCATGTACTCGATGCTT 21381 Query 3769 CGCGCGCACCCGGCGAAAGTCACAGTGCGCATTCTCGGCATGGCCGCTTCTGCCGCATCT 3828 |||| |||||||| | ||||| ||| | | || || || || ||||| || || Sbjct 21380 CGCGAGCACCCGGGCGAGGTCACGGTGAAGGTGATGGGTATCGCGGCCTCTGCAGCCTCC 21321 Query 3829 GTTATCGCTATGGCCGGTGATGAAGTCCTGATCG-GCAAGGCAGGCTTCATTATGGTGCA 3887 | ||||| |||||||| || | || | ||| | || | | |||||| | ||| | || Sbjct 21320 ATCATCGCCATGGCCGGCGACCACGTGCAGATTGCGCGAT-CGGGCTTCCTGATGATCCA 21262 Query 3888 CAACGCTTGGGTTGTCGCGATGGGCAACCGCCACGATCTGGCCGAAGCCGCGAAGACCA- 3946 |||| ||| | | || || ||||||||||| ||| ||| ||| ||||| Sbjct 21261 CAACTGCTGGCTCCTGGCCGCAGGAAACCGCCACGAGCTGCGCGAGATCGC--TGACCAG 21204 Query 3947 -TGGAACCATTCGATGACGCGATGGC 3971 |||| |||||||| | || ||||| Sbjct 21203 CTGGAGCCATTCGACCAGGCAATGGC 21178 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 149879702417952