Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Steinernema_20scapterisci_20[genbank_20GCA_5F000757745.1_202014-09- 24] 2,864 sequences; 79,651,268 total letters Query= NC_031918.1 Length=45342 Score E Sequences producing significant alignments: (Bits) Value seq1458 138 3e-28 seq2599 132 1e-26 seq2629 111 5e-20 >seq1458 Length=11418 Score = 138 bits (152), Expect = 3e-28 Identities = 240/349 (69%), Gaps = 0/349 (0%) Strand=Plus/Minus Query 33579 ACCGCCAATCATTTGCATCACACCACCCATTTGCTGGATAACAATTTCTGTGGTGTATTT 33638 |||||| | ||||||||| ||| || || | | || ||| | ||| || ||||| Sbjct 11202 ACCGCCTAACATTTGCATTGTACCGCCAATCGGGTTGACAACGACTTCAGTCGTGTAACG 11143 Query 33639 TTCAACTCCAGCATTATCAGTCCATTTTCTAGTGCGCAACTGACCTTCAAAATAAACTTG 33698 || ||| | ||| |||||| | || |||| |||||| | ||| || || Sbjct 11142 ATCCTGACCACTCTGATCCTGCCATTTACGGGTCTGCAAAGCACCTTCGATATAGACCTG 11083 Query 33699 TGAGCCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCG 33758 |||||||| | || ||||||||||| | ||| || || || || || || || || || Sbjct 11082 AGAGCCTTTACGCAGGTACTCACCAGCGACTTCTGCCAGTTTACCGAACATGACCACTCG 11023 Query 33759 GTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGT 33818 ||||||||| |||| ||| | ||||||| || ||||||| ||| || || || Sbjct 11022 GTGCCATTCGGTTTTCTCTCTCATCTCACCGGTTTGCTTATCACGCCAGCTCTCGGACGT 10963 Query 33819 AGCAACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTG 33878 || | || | ||||||||| || || ||||| ||||| || || ||||| || ||||| Sbjct 10962 GGCCAGAGTAATGTTGGCAACTGCTCCACCATTCGGCATATAGCGAACTTCCGGATCCTG 10903 Query 33879 GCCTAATGTGCCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCATT 33927 || || | || | | || ||||| |||||||| | | |||||| Sbjct 10902 CCCCAAATTACCCACTAAAATAACTTTGTTTACGCCTCTGCTGGCCATT 10854 >seq2599 Length=15424 Score = 132 bits (146), Expect = 1e-26 Identities = 188/259 (73%), Gaps = 4/259 (2%) Strand=Plus/Plus Query 33674 GCAACTGACCTTCAAAATAAACTTGTGAGCCTTTCCTAAGATACTCACCAGCAATTTCAG 33733 |||| ||||| |||| ||||| || ||||||||| ||||| ||||| |||| ||| | Sbjct 106 GCAATTGACCCTCAATATAAATCTGGCTGCCTTTCCTCAGATATTCACCGGCAACTTCTG 165 Query 33734 CGAGCTTGCCAAAGATAACTACGCGGTGCCATTCAGTTTGCTCCTTTTTCTCACCAGTAG 33793 | || || || || | ||| || ||||||||||| |||| ||| | |||||| | Sbjct 166 CCAGTTTTCCGAACAGAACCACACGGTGCCATTCTGTTTTTTCCCTCAGCTCACCTGATT 225 Query 33794 CCTTATCATTCCATGATTCCGATGTAGCAACAGATACGTTGGCAACAGCGCCGCCATTTG 33853 ||| || ||||||| ||| || ||||| | | | |||| || ||||| ||||| | Sbjct 226 GCTTGTCTTTCCATGCTTCAGAGGTAGCCAGTGTGATATTGGTGACTGCGCCACCATTGG 285 Query 33854 GCATGTATCGCACTTCTGGGTCCTGGCCTAATGTG-CCGAGGATGATTAC-TTTATTTAC 33911 | ||| || ||||| ||||| || ||||| ||| |||| | || ||| | | || || Sbjct 286 GTGAGTAACGTACTTCCGGGTCTTGACCTAA-GTGACCGACCA-GAATACATCTGTTAAC 343 Query 33912 GCCGCGAGTTGCCATTTAT 33930 |||||| |||||||||| Sbjct 344 GCCGCGTTGTGCCATTTAT 362 >seq2629 Length=15125 Score = 111 bits (122), Expect = 5e-20 Identities = 163/228 (71%), Gaps = 2/228 (1%) Strand=Plus/Minus Query 33703 CCTTTCCTAAGATACTCACCAGCAATTTCAGCGAGCTTGCCAAAGATAACTACGCGGTGC 33762 ||||| | ||||| || || |||| |||||| | |||||| || || || || || ||| Sbjct 12474 CCTTTTTTCAGATATTCGCCTGCAACTTCAGCTAACTTGCCGAAAATTACCACTCGATGC 12415 Query 33763 CATTCAGTTTGCTCCTTTTTCTCACCAGTAGCCTTATCATTCCATGATTCCGATGTAGCA 33822 ||||| |||| ||| | ||||| | || ||| ||| ||||||||||| || Sbjct 12414 CATTCGGTTTTCTCGCGCATTTCACCCGATTGTTTGTCACGCCACGATTCCGATGTGGCT 12355 Query 33823 ACAGATACGTTGGCAACAGCGCCGCCATTTGGCATGTATCGCACTTCTGGGTCCTGGCCT 33882 | | | || || || || || || |||||||||||| | ||| ||||| |||||| Sbjct 12354 AGTGTGAGATTTGCTACTGCTCCCCCTGCTGGCATGTATCGAATTTCAGGGTCTTGGCCT 12295 Query 33883 AATGTG-CCGAGGATGATTACTTTATTTACGCCGCGAGTTGCCATTTA 33929 || ||| || | || |||||| || |||||||| | | |||||||| Sbjct 12294 AA-GTGACCTATGAGGATTACCTTGTTTACGCCTTTACTAGCCATTTA 12248 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 144967869475072