Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq1186 118 2e-24 seq1002 118 2e-24 seq316 118 2e-24 >seq1186 Length=5955 Score = 118 bits (130), Expect = 2e-24 Identities = 162/218 (74%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 5585 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 5528 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || ||||||||| || |||| | ||| | | ||| ||| | || Sbjct 5527 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACG-TAATGTTTTAAATGTTT 5469 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 5468 ACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGCA 5414 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 5413 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 5376 >seq1002 Length=6944 Score = 118 bits (130), Expect = 2e-24 Identities = 162/218 (74%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 6659 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 6602 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || ||||||||| || |||| | ||| | | ||| ||| | || Sbjct 6601 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACG-TAATGTTTTAAATGTTT 6543 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 6542 ACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGCA 6488 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 6487 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 6450 >seq316 Length=33296 Score = 118 bits (130), Expect = 2e-24 Identities = 162/218 (74%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 7546 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 7489 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAA-GATT 119 |||||| | || || ||||||||| || |||| | ||| | | ||| ||| | || Sbjct 7488 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACG-TAATGTTTTAAATGTTT 7430 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 7429 ACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGCA 7375 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 7374 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 7337 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751965738645