Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq1186 134 2e-29 seq1002 84.2 3e-14 seq316 84.2 3e-14 seq2528 78.8 1e-12 >seq1186 Length=5955 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 5286 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 5227 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 5226 ATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 5183 Score = 84.2 bits (92), Expect = 3e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 5431 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 5376 >seq1002 Length=6944 Score = 84.2 bits (92), Expect = 3e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 6505 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 6450 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 6360 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 6301 Query 215 AT 216 || Sbjct 6300 AT 6299 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 783 AGAACGGCCATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 731 >seq316 Length=33296 Score = 84.2 bits (92), Expect = 3e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 7392 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 7337 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 7247 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 7188 Query 215 AT 216 || Sbjct 7187 AT 7186 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 813 AGAACGGCCATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 761 >seq2528 Length=2851 Score = 78.8 bits (86), Expect = 1e-12 Identities = 52/58 (90%), Gaps = 0/58 (0%) Strand=Plus/Plus Query 201 AACTAAGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || |||||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 2028 AATTAAGAACGGCCATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 2085 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796763697543