Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq1186 113 9e-23 seq1002 113 9e-23 seq316 113 9e-23 >seq1186 Length=5955 Score = 113 bits (124), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172 ||||||||||||||||||||||||||||||| | |||| |||||||||||||| || | Sbjct 5376 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 5435 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || |||| | || | || ||||||| | | ||||| | ||| Sbjct 5436 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TTAAAACATTACGT 5488 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| || |||||||||||| || | |||||||||| || ||||| || || Sbjct 5489 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 5548 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||||||||||||||||||| Sbjct 5549 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 5584 >seq1002 Length=6944 Score = 113 bits (124), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172 ||||||||||||||||||||||||||||||| | |||| |||||||||||||| || | Sbjct 6450 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 6509 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || |||| | || | || ||||||| | | ||||| | ||| Sbjct 6510 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TTAAAACATTACGT 6562 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| || |||||||||||| || | |||||||||| || ||||| || || Sbjct 6563 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 6622 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||||||||||||||||||| Sbjct 6623 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 6658 >seq316 Length=33296 Score = 113 bits (124), Expect = 9e-23 Identities = 158/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172 ||||||||||||||||||||||||||||||| | |||| |||||||||||||| || | Sbjct 7337 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 7396 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || |||| | || | || ||||||| | | ||||| | ||| Sbjct 7397 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TTAAAACATTACGT 7449 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| || |||||||||||| || | |||||||||| || ||||| || || Sbjct 7450 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 7509 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||||||||||||||||||| Sbjct 7510 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 7545 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947155453184