Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq316 282 1e-73 seq1007 102 3e-19 >seq316 Length=33296 Score = 282 bits (312), Expect = 1e-73 Identities = 339/462 (73%), Gaps = 23/462 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||| ||||| Sbjct 17000 CTTTTACTCTACAAGAGGTTTCTGTCCTCTTTGAGTTTGCCTTAGGACACCTACGTTACA 16941 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | |||||| ||||||||| |||||||||| || |||| ||||| || |||| Sbjct 16940 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACATGGTCATTGACGTGGATT 16881 Query 127 GGCC------CGCGAAGG----ACCTTAACGCCAGAAA------ATGGTCGGTGAAGACC 170 | | ||| | |||| | | || || | | | Sbjct 16880 ATTAAAATATCTCAAAGATATTAATTTAATACAACAATTATTATATTATAATAATATAAA 16821 Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG 230 | |||| | || | ||||||||| | | ||| |||||||||||||| | || Sbjct 16820 ATTTCCATATAATCAACTAAGTAAAATATCAATATAAGTAGTGGTATTTCAAGTTCGTTA 16761 Query 231 AAACGG-------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 || ||||||| ||||||||||||| | | || ||||||| | | ||| Sbjct 16760 TAAATAAATATAACTCCCACCTATTCTACACCTCATATGACACTTCACAATGCCTAGCTA 16701 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 16700 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCT 16641 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||| ||||||| || ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 16640 GTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGT 16581 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTC 445 | ||||| |||||||||||||||||||||||||||||| Sbjct 16580 CGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAGAGTC 16539 >seq1007 Length=6903 Score = 102 bits (112), Expect = 3e-19 Identities = 88/109 (81%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||| ||||| Sbjct 2093 CTTTTACTCTACAAGAGGTTTCTGTCCTCTTTGAGTTTGCCTTAGGACACCTACGTTACA 2152 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCAT 115 |||| | |||||| ||| ||||| |||||||||| || |||| ||||| Sbjct 2153 GTTTGATAGATGTACCGTCCCAGTCAAACTCCCCGCCAGACATGGTCAT 2201 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635123096544