Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20papillosus_20[genbank_20GCA_5F000936265.1_202014-11- 13] 4,703 sequences; 60,447,969 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq21 197 1e-45 >seq21 Length=323752 Score = 197 bits (218), Expect = 1e-45 Identities = 475/710 (67%), Gaps = 9/710 (1%) Strand=Plus/Minus Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 ||||| || |||||||| || ||||| |||||||| || ||||||||| | ||| | || Sbjct 30979 GTGTTAGCCTTCTTTGCTGCATCGGATGGTATCGTTAACGAGAATTTAGTTGAAAGATTT 30920 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | |||| || || || | ||||| || | |||||| || || || ||||||||||| Sbjct 30919 TCAAAGGAAGTCCAGGTCCCCGAGGCACGCTTTTTCTATGGTTTTCAAATTGCCATGGAA 30860 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA 61386 ||| | || ||||||||| || || || || ||||| | || | || || Sbjct 30859 AATATTCATAGTGAGATGTACTCGAAACTTATTGAAACCTACATTCGTGATCAGGATGAG 30800 Query 61387 CGTGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTGG 61446 | | | | ||||| || | || | || | | |||||| |||||| Sbjct 30799 AGAAATAAACTCTTCAACGCTTTGGATGAATTTCCTTTCATCAGAAAGAAAGCTGATTGG 30740 Query 61447 GCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGCG 61506 || | | ||||| || | || ||||| ||||| ||||| | | || ||||| Sbjct 30739 GCTCTAAGATGGATTGCCGACAAAAACGCTACTTTTGGAGAACGTGTAATTGCTTTTGCA 30680 Query 61507 GTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACGT 61566 | || || || |||| ||| ||| || ||||| || || || ||| | ||||||||| Sbjct 30679 GCTGTTGAAGGAATATTCTTCTCTGGTTCATTTGCTGCCATATTCTGGCTTAAGAAACGT 30620 Query 61567 GGACTTATGCCCGGTCTGAC-CTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | |||||||| | || | | | ||||||||||| || || || ||||| | || Sbjct 30619 GGCTTGATGCCCGGGTTAACACATTCG-AATGAGTTGATTTCCCGAGATGAGGGGTTACA 30561 Query 61626 TTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| ||| || | | || | || ||| ||| || || || || | Sbjct 30560 CCGTGATTTTGCATGTCTT-ATGTACA---GTTACTTGGAGAACAAGCCATCTGAAGAAC 30505 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744 || | || || || | || || || | ||| ||| |||||| ||| ||||| ||| Sbjct 30504 GTATAAAGGAAATAATTAGAGATGCCGTTAGTATTGAAAAGGAATATCTTACTGATGCTC 30445 Query 61745 TGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTG 61804 | || || | ||||| ||||||| || |||||| | ||||| || | ||||| Sbjct 30444 TTCCTGTTGATATGATCGGAATGAATTCAGGTTTAATGTGTGATTATATCGAGTATGTTG 30385 Query 61805 CCGACCGTCTGTTGGTCG-ATTTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTT 61863 |||| | ||| ||||| | | || | | || | | |||||||| || ||||||||| Sbjct 30384 CCGATCATCTATTGGTAGAACTTAATTGTCAA-AAGCTTTATAATACTAAGAACCCATTT 30326 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| |||| | | || | || ||||| || ||||| || ||||| Sbjct 30325 GATTTTATGGTTAATCTCTCAATTGAAGGCAAAACCAATTTCTTTGAGAA 30276 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397545212271920