Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq20 107 3e-21 seq3 82.4 1e-13 >seq20 Length=36351 Score = 107 bits (118), Expect = 3e-21 Identities = 160/219 (73%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 31018 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 31075 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| | || | |||||||| || |||| | ||| ||| |||||| | | Sbjct 31076 CTCGTTCATGAAACATAATTGCAAGTTTCACTCCCAGTTACGTAATGT--TTTCAATGTT 31133 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 31134 TACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGC 31188 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | |||||||||||||||||||||||||||| || Sbjct 31189 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 31227 >seq3 Length=4663306 Score = 82.4 bits (90), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 9/218 (4%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||| |||| | |||| || | | || | ||| |||||| | Sbjct 4433065 GTACAAAGTGCAGGGACGTAATCAATGTAAGCTA-ATAATTTACGTTCACTTGGAATT-C 4433122 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||| | || | ||||| || || |||| | || || | ||| ||| | || Sbjct 4433123 CTCGTTCATGAAACATAATTGTAAGTTTCACTCCCAGTTAC-ATAATGTTTTCAATGTTT 4433181 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 4433182 ACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGCA 4433236 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | |||||||||||||||||||||||||||| || Sbjct 4433237 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 4433274 Score = 82.4 bits (90), Expect = 1e-13 Identities = 154/218 (71%), Gaps = 9/218 (4%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||| ||||||||||| |||| | |||| || | | || | ||| |||||| | Sbjct 4445156 GTACAAAGTGCAGGGACGTAATCAATGTAAGCTA-ATAATTTACGTTCACTTGGAATT-C 4445099 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTT-CAAAGATT 119 |||||| | || | ||||| || || |||| | || || | ||| ||| | || Sbjct 4445098 CTCGTTCATGAAACATAATTGTAAGTTTCACTCCCAGTTAC-ATAATGTTTTCAATGTTT 4445040 Query 120 ACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGCG 179 |||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 4445039 ACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGCA 4444985 Query 180 GCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | |||||||||||||||||||||||||||| || Sbjct 4444984 GCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 4444947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751999016525