Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01000278.1 Length=318 Score E Sequences producing significant alignments: (Bits) Value seq20 111 3e-22 >seq20 Length=36351 Score = 111 bits (122), Expect = 3e-22 Identities = 180/253 (71%), Gaps = 17/253 (7%) Strand=Plus/Minus Query 71 ACTTTTACTTTGAAAAAATTAGAGTGTTCAAAGCAGGCCTT---TGCTCGAATACATTAG 127 ||| |||||||||| |||| |||| ||||||| ||||| || |||| | || ||| Sbjct 31894 ACTGTTACTTTGAATAAATCAGAGGGTTCAAACCAGGCATTATATGCTTGTATGGTCTAG 31835 Query 128 CATGGAATAATAGAATAGGACGTGCGGTTCTATTTTGT-TGGTTTCTAGGACCGCCGTAA 186 |||||||||| | |||| | | || || ||||||| | | | | | Sbjct 31834 CATGGAATAACACTATAGAAAAAG---------TTAGTGTGGTTTC-ACTATCTTTTTCA 31785 Query 187 TGATTAATAGGGATAGTCGGGGGTGTCAGTATTCAATTGTCAGAGGTGAAATTCTTGGAT 246 ||||||||||| | | |||||| | |||| || |||||||||||||||||| Sbjct 31784 TGATTAATAGGAACAAACGGGGGCATTCGTATCGCTACGTTAGAGGTGAAATTCTTGGAC 31725 Query 247 T-TATTGAAGACTAACTACTGCGAAAGCGTTCACCAAGGATGTTTTCATTAATCAGTGAA 305 || || ||| ||||||||||||| || ||||| |||||||||||||||| ||| Sbjct 31724 CGTAGCGA-GACGTCCTACTGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCA-AGAA 31667 Query 306 CGAAAGTTAGGGG 318 |||||||||| || Sbjct 31666 CGAAAGTTAGAGG 31654 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 915198764480