Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq20 113 2e-22 >seq20 Length=36351 Score = 113 bits (124), Expect = 2e-22 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Plus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||| | | ||||||||| |||| |||| |||| || Sbjct 18909 TGCGACCCGAAAGATGGTGAACTATACTAGTGCAGGGTGAAGTCAGAAGAAATTCTGATG 18968 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||||| ||| ||||||||||| ||||| | | |||||||||||| Sbjct 18969 GAAGCTCGAAGCGGTCCTGACGTGCAAATCGGTCGTCTGACATTAGTATAGGGGCGA 19025 Score = 113 bits (124), Expect = 2e-22 Identities = 95/117 (81%), Gaps = 0/117 (0%) Strand=Plus/Minus Query 567 TGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGAGGAAACTCTGGTG 626 || |||||||||||||||||||||| | | ||||||||| |||| |||| |||| || Sbjct 29326 TGCGACCCGAAAGATGGTGAACTATACTAGTGCAGGGTGAAGTCAGAAGAAATTCTGATG 29267 Query 627 GAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGTATAGGGGCGA 683 || ||||| |||||| ||| ||||||||||| ||||| | | |||||||||||| Sbjct 29266 GAAGCTCGAAGCGGTCCTGACGTGCAAATCGGTCGTCTGACATTAGTATAGGGGCGA 29210 Score = 100 bits (110), Expect = 1e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Plus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || | || | |||| || ||||| ||||||| Sbjct 18295 GAGTCGTGTTGCTTGGAAGTGCAGCGCAAAGTTGGTGATAAACATCATCTAAGGCTAAAT 18354 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| || ||||||||| ||||||| |||| |||| || |||| ||| ||| Sbjct 18355 ATTCCTATGAATCCGATAGCGAACAAGTACTGTGAAGGAAAATTGCAAAGTACTCCGGAG 18414 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 18415 AGAGAGTTAAAGAGGACGTGAAA 18437 Score = 100 bits (110), Expect = 1e-18 Identities = 108/143 (76%), Gaps = 0/143 (0%) Strand=Plus/Minus Query 40 GAGTCGAGTTGTTTGGGAATGCAGCTCTAAATGGGAGGTAAATTTCTTCTAAAGCTAAAT 99 |||||| |||| |||| | |||||| | || | || | |||| || ||||| ||||||| Sbjct 29940 GAGTCGTGTTGCTTGGAAGTGCAGCGCAAAGTTGGTGATAAACATCATCTAAGGCTAAAT 29881 Query 100 ATTGGCCAGAGACCGATAGCGCACAAGTAGAGTGATCGAAAGATGAAAAGCACTTTGGAA 159 ||| || ||||||||| ||||||| |||| |||| || |||| ||| ||| Sbjct 29880 ATTCCTATGAATCCGATAGCGAACAAGTACTGTGAAGGAAAATTGCAAAGTACTCCGGAG 29821 Query 160 AGAGAGTTAAAAAGCACGTGAAA 182 ||||||||||| || |||||||| Sbjct 29820 AGAGAGTTAAAGAGGACGTGAAA 29798 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2079997104250