Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq20 134 2e-29 seq23 113 7e-23 seq5 107 3e-21 seq3 78.8 1e-12 >seq20 Length=36351 Score = 134 bits (148), Expect = 2e-29 Identities = 93/104 (89%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 31308 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 31367 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 ||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 31368 ATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 31411 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || Sbjct 31172 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 31227 >seq23 Length=29653 Score = 113 bits (124), Expect = 7e-23 Identities = 88/104 (85%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAACTAAGAACGGCC 214 || |||||| ||||||| ||||| || ||||||||||| ||||| |||||||||||||| Sbjct 1777 AAAGTCTCGCTCGTTATTGGAATCAATCAGACAAATCATATCCACGAACTAAGAACGGCC 1836 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||||||| || ||||| |||||||||||||||||||| Sbjct 1837 ATTAACCACCAAACACTAAATCATGAAAGAGCTATCAATCTGTC 1880 >seq5 Length=894123 Score = 107 bits (118), Expect = 3e-21 Identities = 87/104 (84%), Gaps = 1/104 (1%) Strand=Plus/Plus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCAC-TCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| ||| ||| ||||| ||||| |||||||||||||| Sbjct 878574 AAAGTCTCGCTCGTTATCGGAATCAACTAGATAAATCTTATCCACGAACTAAGAACGGCC 878633 Query 215 ATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 || ||| ||| ||| ||||| |||||||||||||||||||| Sbjct 878634 ATTAACCGCCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 878677 >seq3 Length=4663306 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || Sbjct 4433219 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 4433274 Score = 78.8 bits (86), Expect = 1e-12 Identities = 51/56 (91%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | |||||||||||||||||||||||||||| || Sbjct 4445002 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATCGC 4444947 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796798957935