Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq20 343 3e-92 seq8 194 3e-47 >seq20 Length=36351 Score = 343 bits (380), Expect = 3e-92 Identities = 234/263 (89%), Gaps = 0/263 (0%) Strand=Plus/Plus Query 31 TCATCAGTAGGGTAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTA 90 ||| ||||||| |||||||||||||||||| ||||||||||||||||||||||||||||| Sbjct 35868 TCAACAGTAGGATAAAACTAACCTGTCTCACGACGGTCTAAACCCAGCTCACGTTCCCTA 35927 Query 91 TTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGA 150 ||||||||||||||||||||||||| |||| ||||||||| ||||||||||||||||| Sbjct 35928 TTAGTGGGTGAACAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGA 35987 Query 151 CATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCC 210 |||||||||||||||||||||||||| |||| || ||||||||||||||||||||||||| Sbjct 35988 CATCGAAGGATCAAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCC 36047 Query 211 CTGTGGTAACTTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGG 270 ||||||||||||||||||||||||| ||| | || |||||||||||||| Sbjct 36048 CTGTGGTAACTTTTCTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAGG 36107 Query 271 CCACACTTTCATGGTTTGTATTC 293 |||| |||||| ||| ||||||| Sbjct 36108 CCACCCTTTCAGGGTCTGTATTC 36130 Score = 145 bits (160), Expect = 1e-32 Identities = 112/133 (84%), Gaps = 0/133 (0%) Strand=Plus/Minus Query 161 TCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 220 |||||||||||||||| |||| || ||||||||||||||||||||||||||||||||||| Sbjct 21020 TCAAAAAGCAACGTCGATATGGACTCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAAC 20961 Query 221 TTTTCTGGCACCTCTAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 ||||||||||||||| ||| | || |||||||||||||||||| ||||| Sbjct 20960 TTTTCTGGCACCTCTTTTTAGAAACATACTAATACAAAAGGATCGATAGGCCACCCTTTC 20901 Query 281 ATGGTTTGTATTC 293 | ||| ||||||| Sbjct 20900 AGGGTCTGTATTC 20888 >seq8 Length=526229 Score = 194 bits (214), Expect = 3e-47 Identities = 121/130 (93%), Gaps = 0/130 (0%) Strand=Plus/Plus Query 43 TAAAACTAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 102 |||||||||||||||||| |||||||| |||||||||||||||||||||||||||||||| Sbjct 62458 TAAAACTAACCTGTCTCACGACGGTCTGAACCCAGCTCACGTTCCCTATTAGTGGGTGAA 62517 Query 103 CAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATC 162 ||||||||||||| |||| ||||||||| ||||||||||||||||||||||||| ||| Sbjct 62518 CAATCCAACGCTTGGCGAAATCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGAATC 62577 Query 163 AAAAAGCAAC 172 ||||| |||| Sbjct 62578 AAAAATCAAC 62587 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 854398846560