Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq20 349 1e-93 seq8 221 4e-55 >seq20 Length=36351 Score = 349 bits (386), Expect = 1e-93 Identities = 398/533 (75%), Gaps = 20/533 (4%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||| ||||| Sbjct 20854 CTTTTACTCTACAAGAGGTTTCTGTCCTCTTTGAGTTTGCCTTAGGACACCTACGTTACA 20795 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | |||||| ||||||||| |||||||||| || |||| ||||| || |||| Sbjct 20794 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACATGGTCATTGACGTGGATT 20735 Query 127 GGCC-----CGCGAAGG----ACCTTAACGCCAGAAAATGGTCGGTGAAG--------AC 169 | | ||| | |||| | | ||| | | | || | Sbjct 20734 ATTAAATATCTCAAAGATATTAATTTAATACAA-AAATTATTATATAAATTAATATATAA 20676 Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCC 229 | |||| || || | ||||||||| | | ||| |||||||||||||| || Sbjct 20675 AATTTCCATTTAATCAACTAAGTAAAATATCAATATAAGTAGTGGTATTTCAAGATCGTT 20616 Query 230 G--AAACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGT 287 ||| ||||||| ||| ||||||||| | | || ||||||| | | ||||||| Sbjct 20615 ATAAAATAACTCCCACCTATGCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGT 20556 Query 288 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGG 347 |||||||||||||||||||||||||||||| || |||||||||||||||||||||||| Sbjct 20555 CAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGA 20496 Query 348 TTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACT 407 ||||||| || ||||||||||||||| |||||||||||||||||||| |||||||| Sbjct 20495 TTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGA 20436 Query 408 AATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACC 467 ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 20435 AATTACCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTTTACA 20376 Query 468 CGCGCTTGGTTGAATTTCTTCACTTTGACATTCAGAGCACTGGGCAGAAATCA 520 | |||| | |||| | | ||||||| ||||||||||||||||| Sbjct 20375 AGAGCTTCAATTGGTTTCCCAATGATAACATTCATTGCACTGGGCAGAAATCA 20323 Score = 266 bits (294), Expect = 1e-68 Identities = 218/264 (83%), Gaps = 2/264 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGGCTCCCACTT 245 ||||||||| | | ||| |||||||||||||| || ||| ||||||| | Sbjct 21106 TAAGTAAAATATCAATATAAGTAGTGGTATTTCAAGATCGTTATAAAATAACTCCCACCT 21165 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || ||||||||| | | || ||||||| | | ||||||||||||||||||||||||| Sbjct 21166 ATGCTACACCTCATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAACAGGGTCTT 21225 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 |||||||||||| || |||||||||||||||||||||||| ||||||| || |||||| Sbjct 21226 CTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTGTGATTTCGCTGAATGGTAGAT 21285 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||||||||| |||||||||||||||||||| |||||||| ||||| |||||||||| Sbjct 21286 AGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACGAGGCAT 21345 Query 426 TTGGCTACCTTAAGAGAGTCATAG 449 ||||||||||||||||||||| || Sbjct 21346 TTGGCTACCTTAAGAGAGTCACAG 21369 Score = 107 bits (118), Expect = 6e-21 Identities = 89/109 (82%), Gaps = 0/109 (0%) Strand=Plus/Plus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||| ||||| Sbjct 36164 CTTTTACTCTACAAGAGGTTTCTGTCCTCTTTGAGTTTGCCTTAGGACACCTACGTTACA 36223 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCAT 115 |||| | |||||| ||||||||| |||||||||| || |||| ||||| Sbjct 36224 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACATGGTCAT 36272 >seq8 Length=526229 Score = 221 bits (244), Expect = 4e-55 Identities = 206/261 (79%), Gaps = 2/261 (1%) Strand=Plus/Plus Query 188 TAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG--AAACGGCTCCCACTT 245 ||||||||| | ||| |||||||||||||| || ||| |||||| | Sbjct 62672 TAAGTAAAATATTAATATAAGTAGTGGTATTTCAAGATCGTTATAAAATAACTCCCATCT 62731 Query 246 ATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCAACAGGGTCTT 305 || || ||||| | | || ||||||| | | ||||||||||||||||||| ||||| Sbjct 62732 ATGCTTCACCTTATATGACACTTCACAATGCCTAGCTAGAGTCAAGCTCAACAGAGTCTT 62791 Query 306 CTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTAGATAGTAGAT 365 ||||||| |||| || ||||||||||||||||||||| || ||||||| || |||||| Sbjct 62792 CTTTCCCTGCTGTTTTTGCCAAGCCCGTTCCCTTGGCTATGATTTCGCTGAATGGTAGAT 62851 Query 366 AGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCACTAATTAGATGACGAGGCAT 425 ||| ||||| |||||||||||||||||||| |||||||| ||||| ||| || ||| Sbjct 62852 AGGAACAGTAGGAATCTCGTTAATCCATTCGTGCGCGTCGGAAATTACCCGACAAGACAT 62911 Query 426 TTGGCTACCTTAAGAGAGTCA 446 ||||||||||||||||||||| Sbjct 62912 TTGGCTACCTTAAGAGAGTCA 62932 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635197792480