Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= AAMG01002244.1 Length=504 Score E Sequences producing significant alignments: (Bits) Value seq20 203 1e-49 >seq20 Length=36351 Score = 203 bits (224), Expect = 1e-49 Identities = 127/137 (93%), Gaps = 0/137 (0%) Strand=Plus/Plus Query 73 ATTGGGTAATTTGCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 132 |||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 32163 ATTGGGTAATTTTCGCGCCTGCTGCCTTCCTTGGATGTGGTAGCCGTTTCTCAGGCTCCC 32222 Query 133 TCTCCGGAATCGAACCCTAATTCCCCGTTACCCGTTGATACCATGGTAGGCCACTATCCT 192 |||||||| |||||||||||||| |||||| |||| |||||||||||||| || ||| Sbjct 32223 TCTCCGGAGTCGAACCCTAATTCTCCGTTATCCGTCACAACCATGGTAGGCCAATACCCT 32282 Query 193 ACCATCGAAAGTTGATA 209 ||||||||||||||||| Sbjct 32283 ACCATCGAAAGTTGATA 32299 Score = 84.2 bits (92), Expect = 7e-14 Identities = 112/151 (74%), Gaps = 6/151 (4%) Strand=Plus/Plus Query 343 AGCATGTATTAGCTCTAGAATTACCACGGTTATCCATGTAGTAAGGTACT-ATCAAATAA 401 ||| ||||||||||| ||||||||| | |||||||| | ||| || | | | || Sbjct 32408 AGCGTGTATTAGCTCAAGAATTACCTCAGTTATCCA---ACTAAAATATTTACCGTGTAG 32464 Query 402 ACGATAACTGATTTAATGAGCCATTCGCAGTTTCACTGTATAGATTGCTTATACTTAGAC 461 | ||| ||| | |||||||| | ||| |||||| ||| || | || |||||| || Sbjct 32465 TCTATAGCTGTTATAATGAGCTTTCCGCGGTTTCA-TGTTTAAAACA-TTGTACTTACAC 32522 Query 462 ATGCATGGCTTAATCTTTGAGACAAGCATAT 492 |||||||||||||||||| | | ||||| || Sbjct 32523 ATGCATGGCTTAATCTTTAAAATAAGCACAT 32553 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1510397960960