Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18] 135 sequences; 43,150,242 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 156 3e-33 seq2 141 7e-29 >seq1 Length=11693564 Score = 156 bits (172), Expect = 3e-33 Identities = 544/842 (65%), Gaps = 28/842 (3%) Strand=Plus/Plus Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853 || ||| || | ||| | || || | ||| ||||| |||||||| || ||||| || | Sbjct 6013857 ACGCATAAGCATAAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCT 6013916 Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913 || ||| || ||| || ||||| ||||| || ||||||| ||| ||||| |||||| Sbjct 6013917 CATATTTGATTTTCTGGCTTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAA 6013976 Query 65914 ATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAAT---GTTTA 65968 ||| || | | | || || | | | ||||| ||||| |||| ||||| Sbjct 6013977 ATTTTTAGTTAGAATTTTA--GAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTA 6014034 Query 65969 GGACGATCGGGAGTGCCGGACACCA-CAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027 | ||| | || || |||| | ||| |||| |||| | || || || Sbjct 6014035 ---CCATCTACA-------ACTTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACA 6014084 Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087 ||||| | || || || || ||| || |||||||| || || | ||| || Sbjct 6014085 TACAGCAACTTCATCTGGTGCACAATATTCAACAATTTCAGTACATAAATTTGAACATTT 6014144 Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147 ||||| || | ||| ||||||||||| || ||||| || ||| ||||| | ||| || Sbjct 6014145 AATGGTTCCAAGATTTTGTTGATTACTTTTACGATTACAATGATCTTTGTAAACCATATA 6014204 Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207 || || ||||| |||| ||| ||| || ||||||| | | | ||||| | Sbjct 6014205 AGGTGTTCCGGTTTCAATTTGACTTTCACAAATCTTTTGCCAAATAACTCTGGCCTTTAT 6014264 Query 66208 CG----TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263 | ||| || | ||| || || | | || | | || || | | Sbjct 6014265 TTGTTTTCTGTAACGTTTCTCATTT----TCATACTTGTGATATAATTCCTCAAAAGCCT 6014320 Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323 ||||||| || || | ||||| | ||| || ||||||| ||||||| | | Sbjct 6014321 CACCCCAAGTATCCTCAAGTCCAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGT 6014380 Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383 | | |||||||| |||||||| |||||| ||||| || | || || | ||| || | Sbjct 6014381 CTTTCTCTACACGTTTCATAAATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAG 6014440 Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCA 66442 ||| || || ||| ||| |||||| | ||| || | || || || ||||| ||| Sbjct 6014441 CTCTTTCTTCTTCAGGGCCTGTATTTTT-CTTAAGATCCAAAAATTCTAAAATGTCAGCA 6014499 Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502 ||||||||||| || || || || || | || | ||| || |||||||| || Sbjct 6014500 TGCCATGGTTCTAGATATATAGCAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACA 6014559 Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562 ||||| || |||||| || || | |||||| |||| | || |||||| | ||||| Sbjct 6014560 TAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGTATTAATCCATTAGATGTACCATTT 6014619 Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622 || || | || || || || || ||| |||||||||| |||||||| || Sbjct 6014620 GTACCACCAATAAAAGAACCATTAGCACGAATACAATGAACATTCAATCCAATACCGCCA 6014679 Query 66623 GC 66624 || Sbjct 6014680 GC 6014681 >seq2 Length=16759152 Score = 141 bits (156), Expect = 7e-29 Identities = 474/729 (65%), Gaps = 19/729 (3%) Strand=Plus/Plus Query 61194 TTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253 ||| ||| || ||| || || |||||||||||||| || ||||| || ||||||||||| Sbjct 14764002 TTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTT 14764061 Query 61254 ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313 | || | || | | || || ||| | | ||||| |||| ||||| || ||||| Sbjct 14764062 GGTCGAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCA 14764121 Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373 ||||||||||| ||| | ||| |||||||| || ||||| || || || | Sbjct 14764122 AATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACG 14764181 Query 61374 GGAGCGGGCGGAACG--TGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431 || | ||| | |||| | | || ||||| | || | | || | | Sbjct 14764182 TGACAATGACGAAAGAATGAA--ACTTTTTAATGCTTTAGATGAGTTTCCATTTATCAGA 14764239 Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGA 61491 ||||| |||||||| || | |||||| | || | ||||| ||||| |||||| Sbjct 14764240 AAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAACGA 14764299 Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551 | | || ||||| | || || ||| | || || ||| || ||||| | || ||| Sbjct 14764300 GTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTT 14764359 Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTG--ACCTTCAGCAATGAGTTGATATCAC 61609 ||| ||||||||||||| | ||||| || || || ||| |||||| ||||| ||| Sbjct 14764360 TGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTC--CAATGAATTGATTTCAA 14764417 Query 61610 GCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668 | || ||||| | || ||||||| | ||| || | || | | || || | || Sbjct 14764418 GAGATGAGGGATTACACCGTGATTTCGCCTGCCTT-ATGTTTA---GTTACCTTGAAAAC 14764473 Query 61669 CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728 || || || || ||| | || ||| || | || || ||| ||| ||||| Sbjct 14764474 AAACCATCTGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAA 14764533 Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788 | || || || ||| | || || | || || ||||| | | |||||| Sbjct 14764534 TACCTTACAGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACA 14764593 Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA---TTTGGGTATGAAGCGGATCTAT 61845 |||||||||| ||| || |||| | ||||||| || | || || | | ||| Sbjct 14764594 TATATTGAATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAAC---TTTAT 14764650 Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905 ||| || ||||| |||||||| |||| | ||||| | || || || || ||||| Sbjct 14764651 AATGTTAAGAACCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTC 14764710 Query 61906 TTCGAGAAA 61914 || |||||| Sbjct 14764711 TTTGAGAAA 14764719 Score = 98.7 bits (108), Expect = 8e-16 Identities = 196/288 (68%), Gaps = 2/288 (1%) Strand=Plus/Minus Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340 |||| |||||| | | |||||||| | ||||||| | ||||||||| ||||| | Sbjct 8585310 AGACCTGGACATTCATAAGGACACATTAATGACCAATGAAGATCCTGTTCAACACGTTTC 8585251 Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400 ||||||| ||| || | ||| || | || || | ||| || |||| ||||| || | Sbjct 8585250 ATAAATAAATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTC-TTGCTTCTTCTGG 8585192 Query 66401 CCGTGA-TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459 | || ||||| | || || | || || | || || |||||||||||||||| ||| Sbjct 8585191 ACCTGTGTTTTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTA 8585132 Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519 ||| || || | || ||||| ||||| || || || || ||||| | | || Sbjct 8585131 GATTGCAAATGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTACTATT 8585072 Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 | ||||| ||||| |||| | || || ||| ||||| || || Sbjct 8585071 ATAAACACGTAACATTGGTATTAAACCATTTGATGATCCATTTGTTCC 8585024 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397567345876400