Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20ratti_20[genbank_20GCA_5F001040885.1_202014-09-18]
135 sequences; 43,150,242 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq1 156 3e-33
seq2 141 7e-29
>seq1
Length=11693564
Score = 156 bits (172), Expect = 3e-33
Identities = 544/842 (65%), Gaps = 28/842 (3%)
Strand=Plus/Plus
Query 65794 ACCCATCAGGACAAAAGTGTCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACG 65853
|| ||| || | ||| | || || | ||| ||||| |||||||| || ||||| || |
Sbjct 6013857 ACGCATAAGCATAAATGCATCAGCTAAACCCTGAACACCAATACCAATTGGACGGTGTCT 6013916
Query 65854 CAAATTGGAACGTCTCGCCTCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAA 65913
|| ||| || ||| || ||||| ||||| || ||||||| ||| ||||| ||||||
Sbjct 6013917 CATATTTGATTTTCTGGCTTCAGGGACAGGATAATAATTGACATCAATAATTTTATTCAA 6013976
Query 65914 ATTGCGTGTCACCACATGCACGATACGTC--GCAATTGTTCGAAATCAAAAT---GTTTA 65968
||| || | | | || || | | | ||||| ||||| |||| |||||
Sbjct 6013977 ATTTTTAGTTAGAATTTTA--GAAACAACATGAAGTTGTTTGAAATTAAAAGCAGGTTTA 6014034
Query 65969 GGACGATCGGGAGTGCCGGACACCA-CAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCA 66027
| ||| | || || |||| | ||| |||| |||| | || || ||
Sbjct 6014035 ---CCATCTACA-------ACTTCAACAAATCTATTAAGAGCAATAGATCCTAGATTACA 6014084
Query 66028 GACAGCTATCTCGTCAGGAGCGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCG 66087
||||| | || || || || ||| || |||||||| || || | ||| ||
Sbjct 6014085 TACAGCAACTTCATCTGGTGCACAATATTCAACAATTTCAGTACATAAATTTGAACATTT 6014144
Query 66088 TATGGTGCCCAAATTCTGTTGATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTA 66147
||||| || | ||| ||||||||||| || ||||| || ||| ||||| | ||| ||
Sbjct 6014145 AATGGTTCCAAGATTTTGTTGATTACTTTTACGATTACAATGATCTTTGTAAACCATATA 6014204
Query 66148 CGGAGTGCCGGTCTCAACTTGGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC 66207
|| || ||||| |||| ||| ||| || ||||||| | | | ||||| |
Sbjct 6014205 AGGTGTTCCGGTTTCAATTTGACTTTCACAAATCTTTTGCCAAATAACTCTGGCCTTTAT 6014264
Query 66208 CG----TACGTACCGCCCTACCTTTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATT 66263
| ||| || | ||| || || | | || | | || || | |
Sbjct 6014265 TTGTTTTCTGTAACGTTTCTCATTT----TCATACTTGTGATATAATTCCTCAAAAGCCT 6014320
Query 66264 CACCCCATACTTCGGACAGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCAT 66323
||||||| || || | ||||| | ||| || ||||||| ||||||| | |
Sbjct 6014321 CACCCCAAGTATCCTCAAGTCCAGGACATTCGTGGGGGCACATCAAAGACCAATAAGAGT 6014380
Query 66324 CCTGTTCTACACGACGCATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTG 66383
| | |||||||| |||||||| |||||| ||||| || | || || | ||| || |
Sbjct 6014381 CTTTCTCTACACGTTTCATAAATAAATCAGGAATCCAAAGACCATAAAATAAATCACGAG 6014440
Query 66384 CTCGTTGCTCCTCAATGCCGTGATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCA 66442
||| || || ||| ||| |||||| | ||| || | || || || ||||| |||
Sbjct 6014441 CTCTTTCTTCTTCAGGGCCTGTATTTTT-CTTAAGATCCAAAAATTCTAAAATGTCAGCA 6014499
Query 66443 TGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACG 66502
||||||||||| || || || || || | || | ||| || |||||||| ||
Sbjct 6014500 TGCCATGGTTCTAGATATATAGCAAATGCTCCAGGTCTTTTATTTCCCCCTTGGTCAACA 6014559
Query 66503 TAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTG 66562
||||| || |||||| || || | |||||| |||| | || |||||| | |||||
Sbjct 6014560 TAGCGTGCTGTATTGTTAAAAACTCTCAACATTGGTATTAATCCATTAGATGTACCATTT 6014619
Query 66563 GTGCCGTCGATGGGGGATCCTCGTGCCCGTATATCGTGAACATTCAGACCAATACCACCG 66622
|| || | || || || || || ||| |||||||||| |||||||| ||
Sbjct 6014620 GTACCACCAATAAAAGAACCATTAGCACGAATACAATGAACATTCAATCCAATACCGCCA 6014679
Query 66623 GC 66624
||
Sbjct 6014680 GC 6014681
>seq2
Length=16759152
Score = 141 bits (156), Expect = 7e-29
Identities = 474/729 (65%), Gaps = 19/729 (3%)
Strand=Plus/Plus
Query 61194 TTTCATTAAACATGTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTT 61253
||| ||| || ||| || || |||||||||||||| || ||||| || |||||||||||
Sbjct 14764002 TTTTATTTCACGTGTCTTAGCTTTCTTTGCCGCTTCTGATGGTATTGTTAATGAGAATTT 14764061
Query 61254 ATTGGAACGTTTCGCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCA 61313
| || | || | | || || ||| | | ||||| |||| ||||| || |||||
Sbjct 14764062 GGTCGAGAGATTTTCTAAAGAAGTTCAAATTCCCGAGGCACGTTTCTTCTATGGTTTCCA 14764121
Query 61314 GATTGCCATGGAGAATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAG 61373
||||||||||| ||| | ||| |||||||| || ||||| || || || |
Sbjct 14764122 AATTGCCATGGAAAATATTCACAGTGAGATGTATTCAAAACTTATCGAAACCTATATACG 14764181
Query 61374 GGAGCGGGCGGAACG--TGAACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAG 61431
|| | ||| | |||| | | || ||||| | || | | || | |
Sbjct 14764182 TGACAATGACGAAAGAATGAA--ACTTTTTAATGCTTTAGATGAGTTTCCATTTATCAGA 14764239
Query 61432 CGGAAAGCGGATTGGGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGA 61491
||||| |||||||| || | |||||| | || | ||||| ||||| ||||||
Sbjct 14764240 AAAAAAGCTGATTGGGCTTTAAGATGGATCGCTGATAAGAATGCTACTTTTGGAGAACGA 14764299
Query 61492 TTGCTGGCATTTGCGGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTT 61551
| | || ||||| | || || ||| | || || ||| || ||||| | || |||
Sbjct 14764300 GTTATTGCTTTTGCAGCTGTTGAAGGTATCTTCTTTTCTGGTTCATTTGCTTCCATATTT 14764359
Query 61552 TGGTTGAAGAAACGTGGACTTATGCCCGGTCTG--ACCTTCAGCAATGAGTTGATATCAC 61609
||| ||||||||||||| | ||||| || || || ||| |||||| ||||| |||
Sbjct 14764360 TGGCTGAAGAAACGTGGTTTGATGCCAGGATTGACACATTC--CAATGAATTGATTTCAA 14764417
Query 61610 GCGACGAGGGCATGCATTGTGATTTTG-CTGTTTTGCTATTCAAACGCTATCTGGTGAAT 61668
| || ||||| | || ||||||| | ||| || | || | | || || | ||
Sbjct 14764418 GAGATGAGGGATTACACCGTGATTTCGCCTGCCTT-ATGTTTA---GTTACCTTGAAAAC 14764473
Query 61669 CGTCCGTCGGAGGAGCGTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAA 61728
|| || || || ||| | || ||| || | || || ||| ||| |||||
Sbjct 14764474 AAACCATCTGAAGAACGTATAAAAGAAATTATTAAAAATGCAGTTGATATTGAAAAGGAA 14764533
Query 61729 TTTCTGACTGACGCTTTGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAG 61788
| || || || ||| | || || | || || ||||| | | ||||||
Sbjct 14764534 TACCTTACAGATGCTCTTCCTGTTGATATGATTGGAATGAACTCACGTTTAATGTGTACA 14764593
Query 61789 TATATTGAATTTGTTGCCGACCGTCTGTTGGTCGA---TTTGGGTATGAAGCGGATCTAT 61845
|||||||||| ||| || |||| | ||||||| || | || || | | |||
Sbjct 14764594 TATATTGAATATGTAGCTGACCATTTGTTGGTGGAACTTAATTGTTCAAAAC---TTTAT 14764650
Query 61846 AATACGAAAAACCCATTTGATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTT 61905
||| || ||||| |||||||| |||| | ||||| | || || || || |||||
Sbjct 14764651 AATGTTAAGAACCCCTTTGATTTTATGGTTAATATTTCAATTGAGGGAAAAACAAATTTC 14764710
Query 61906 TTCGAGAAA 61914
|| ||||||
Sbjct 14764711 TTTGAGAAA 14764719
Score = 98.7 bits (108), Expect = 8e-16
Identities = 196/288 (68%), Gaps = 2/288 (1%)
Strand=Plus/Minus
Query 66281 AGACATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGC 66340
|||| |||||| | | |||||||| | ||||||| | ||||||||| ||||| |
Sbjct 8585310 AGACCTGGACATTCATAAGGACACATTAATGACCAATGAAGATCCTGTTCAACACGTTTC 8585251
Query 66341 ATAAATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATG 66400
||||||| ||| || | ||| || | || || | ||| || |||| ||||| || |
Sbjct 8585250 ATAAATAAATCTGGAACCCAAAGTCCATAAAATAAATCACGAGCTC-TTGCTTCTTCTGG 8585192
Query 66401 CCGTGA-TTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTA 66459
| || ||||| | || || | || || | || || |||||||||||||||| |||
Sbjct 8585191 ACCTGTGTTTTTTCTTAAATCTAAAAATTCCATTATATCAGCATGCCATGGTTCCAAGTA 8585132
Query 66460 GATGGCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTT 66519
||| || || | || ||||| ||||| || || || || ||||| | | ||
Sbjct 8585131 GATTGCAAATGCCCCAGGTCGTTTATTACCACCCTGATCAACATAACGAGCAGTACTATT 8585072
Query 66520 GAAGACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567
| ||||| ||||| |||| | || || ||| ||||| || ||
Sbjct 8585071 ATAAACACGTAACATTGGTATTAAACCATTTGATGATCCATTTGTTCC 8585024
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 397567345876400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |