Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20stercoralis_20[genbank_20GCA_5F000947215.1_202014- 11-13] 800 sequences; 42,674,647 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq101 302 1e-79 >seq101 Length=67252 Score = 302 bits (334), Expect = 1e-79 Identities = 362/491 (74%), Gaps = 23/491 (5%) Strand=Plus/Minus Query 7 CTTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATG 66 ||||| ||||||| ||| ||||||| ||| ||||| ||||||||||||| ||||| Sbjct 34336 CTTTTACTCTACAAGAGGTTTCTGTCCTCTTTGAGTTTGCCTTAGGACACCTACGTTACA 34277 Query 67 GTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATC 126 |||| | |||||| ||||||||| |||||||||| || |||| ||||| || |||| Sbjct 34276 GTTTGATAGATGTACCGCCCCAGTCAAACTCCCCGCCAGACATGGTCATTGACGTGGATT 34217 Query 127 GGCCCG-----CGAAGG----ACCTTAACGCCAGAAA-ATGGTCGGT------GAAGACC 170 | || | |||| | | || || | | | | | Sbjct 34216 ATTAAATATTTCAAAAATATTAATTTAATACAACAATTATTATACATTTTATAGTATAAA 34157 Query 171 AGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCGCCG 230 | |||| | || | |||||||| | | ||| |||||||||||||| | Sbjct 34156 ATTTCCATATAATCAACTAAGTAAAGTATCAATATAAGTAGTGGTATTTCAAGATTGTTA 34097 Query 231 AAACGG-------CTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTA 283 ||| ||||||| ||| ||||||||| | | || ||||||| | | ||| Sbjct 34096 AAATAAAATTTAACTCCCACCTATGCTACACCTCATATGACACTTCACAATGCCTAGCTA 34037 Query 284 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCT 343 |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 34036 GAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGTTTTTGCCAAGCCCGTTCCCTTGGCT 33977 Query 344 GTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGT 403 ||| ||||||| || ||||||||||||||| |||||||||||||||||||| ||||||| Sbjct 33976 GTGATTTCGCTGAATGGTAGATAGGGACAGTAGGAATCTCGTTAATCCATTCGTGCGCGT 33917 Query 404 CACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 463 | ||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 33916 CGGAAATTACCCGACGAGGCATTTGGCTACCTTAAGAGAGTCATAGTTACTCCCGCCGTT 33857 Query 464 TACCCGCGCTT 474 ||| | |||| Sbjct 33856 TACAAGAGCTT 33846 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1635186918400