Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015-
06-02] 587 sequences; 52,178,999 total letters
Query= AAMG01000185.1
Length=266
Score E
Sequences producing significant alignments: (Bits) Value
seq8 122 1e-25
seq2 122 1e-25
>seq8
Length=1106993
Score = 122 bits (134), Expect = 1e-25
Identities = 163/219 (74%), Gaps = 11/219 (5%)
Strand=Plus/Minus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| |
Sbjct 8977 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 8920
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118
|||||| | || || ||||||||| || |||| | ||| ||| |||||| | |
Sbjct 8919 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACGTAATGT--TTTCAATGTT 8862
Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||||| | || ||| | | | | | | | ||||| ||||||||||||||
Sbjct 8861 TACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGC 8807
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | |||||||||||||||||||||||||||||||
Sbjct 8806 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 8768
>seq2
Length=3462877
Score = 122 bits (134), Expect = 1e-25
Identities = 163/219 (74%), Gaps = 11/219 (5%)
Strand=Plus/Plus
Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60
|||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| |
Sbjct 190 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 247
Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118
|||||| | || || ||||||||| || |||| | ||| ||| |||||| | |
Sbjct 248 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACGTAATGT--TTTCAATGTT 305
Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178
||||| | || ||| | | | | | | | ||||| ||||||||||||||
Sbjct 306 TACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGC 360
Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217
|||| | |||||||||||||||||||||||||||||||
Sbjct 361 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 751995723705
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |