Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq8 122 1e-25 seq2 122 1e-25 >seq8 Length=1106993 Score = 122 bits (134), Expect = 1e-25 Identities = 163/219 (74%), Gaps = 11/219 (5%) Strand=Plus/Minus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 8977 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 8920 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| | || || ||||||||| || |||| | ||| ||| |||||| | | Sbjct 8919 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACGTAATGT--TTTCAATGTT 8862 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 8861 TACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGC 8807 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 8806 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 8768 >seq2 Length=3462877 Score = 122 bits (134), Expect = 1e-25 Identities = 163/219 (74%), Gaps = 11/219 (5%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTTC 60 |||||||||||||||||||| |||| | |||| |||||| || ||||| |||||| | Sbjct 190 GTACAAAGGGCAGGGACGTAATCAATGTAAGCTA-ATGACTTACGTTTACTTGGAATT-C 247 Query 61 CTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACG--ATGAAATTTCAAAGAT 118 |||||| | || || ||||||||| || |||| | ||| ||| |||||| | | Sbjct 248 CTCGTTCATGAAAAATAATTGCAATTTTCACTCCCAGTTACGTAATGT--TTTCAATGTT 305 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 ||||| | || ||| | | | | | | | ||||| |||||||||||||| Sbjct 306 TACCCATTTATCTCTAAACAGGA-ACATAAT-GATCACTACAT---TGTAGCGCGCGTGC 360 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 217 |||| | ||||||||||||||||||||||||||||||| Sbjct 361 AGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751995723705