Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015-
06-02] 587 sequences; 52,178,999 total letters
Query= AAMG01000911.1
Length=280
Score E
Sequences producing significant alignments: (Bits) Value
seq8 84.2 3e-14
seq2 84.2 3e-14
>seq8
Length=1106993
Score = 84.2 bits (92), Expect = 3e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Minus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| |||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 8823 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 8768
Score = 82.4 bits (90), Expect = 1e-13
Identities = 56/62 (90%), Gaps = 1/62 (2%)
Strand=Plus/Minus
Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCC 214
|| |||||| ||||||||||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 8681 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 8622
Query 215 AT 216
||
Sbjct 8621 AT 8620
Score = 73.4 bits (80), Expect = 6e-11
Identities = 48/53 (91%), Gaps = 0/53 (0%)
Strand=Plus/Minus
Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258
|||||||||||||||||||| ||| ||||| ||||||||||||||||||||
Sbjct 717 AGAACGGCCATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 665
>seq2
Length=3462877
Score = 84.2 bits (92), Expect = 3e-14
Identities = 52/56 (93%), Gaps = 0/56 (0%)
Strand=Plus/Plus
Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72
|| |||||||||||||| |||| | |||||||||||||||||||||||||||||||
Sbjct 344 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 399
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 796795468947
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |