Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= AAMG01000911.1 Length=280 Score E Sequences producing significant alignments: (Bits) Value seq8 84.2 3e-14 seq2 84.2 3e-14 >seq8 Length=1106993 Score = 84.2 bits (92), Expect = 3e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Minus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 8823 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 8768 Score = 82.4 bits (90), Expect = 1e-13 Identities = 56/62 (90%), Gaps = 1/62 (2%) Strand=Plus/Minus Query 156 AAGGTCTCGTTCGTTATCGGAATTAACCAGACAAATCA-CTCCACCAACTAAGAACGGCC 214 || |||||| ||||||||||||| |||||||||||||| ||||| |||||||||||||| Sbjct 8681 AAAGTCTCGCTCGTTATCGGAATCAACCAGACAAATCATATCCACGAACTAAGAACGGCC 8622 Query 215 AT 216 || Sbjct 8621 AT 8620 Score = 73.4 bits (80), Expect = 6e-11 Identities = 48/53 (91%), Gaps = 0/53 (0%) Strand=Plus/Minus Query 206 AGAACGGCCATGCACCACCACCCATAGAATCAAGAAAGAGCTATCAATCTGTC 258 |||||||||||||||||||| ||| ||||| |||||||||||||||||||| Sbjct 717 AGAACGGCCATGCACCACCAACCACTAAATCATGAAAGAGCTATCAATCTGTC 665 >seq2 Length=3462877 Score = 84.2 bits (92), Expect = 3e-14 Identities = 52/56 (93%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 17 CAGTGTAGCGCGCGTGCGGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGC 72 || |||||||||||||| |||| | ||||||||||||||||||||||||||||||| Sbjct 344 CATTGTAGCGCGCGTGCAGCCCCGGACATCTAAGGGCATCACAGACCTGTTATTGC 399 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 796795468947