Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015-
06-02] 587 sequences; 52,178,999 total letters
Query= AAMG01002186.1
Length=328
Score E
Sequences producing significant alignments: (Bits) Value
seq8 109 1e-21
seq2 109 1e-21
>seq8
Length=1106993
Score = 109 bits (120), Expect = 1e-21
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Plus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172
||||||||||||||||||||||||||||||| | |||| |||||||||||||| || |
Sbjct 8768 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 8827
Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232
|| || |||| | || | || ||||||| | | | ||| | |||
Sbjct 8828 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TGAAAACATTACGT 8880
Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292
|||| || |||||||||||| || | |||||||||| || ||||| || ||
Sbjct 8881 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 8940
Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||| | ||||||||||||||||||||||||
Sbjct 8941 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 8976
>seq2
Length=3462877
Score = 109 bits (120), Expect = 1e-21
Identities = 157/216 (73%), Gaps = 8/216 (4%)
Strand=Plus/Minus
Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172
||||||||||||||||||||||||||||||| | |||| |||||||||||||| || |
Sbjct 399 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 340
Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232
|| || |||| | || | || ||||||| | | | ||| | |||
Sbjct 339 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TGAAAACATTACGT 287
Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292
|||| || |||||||||||| || | |||||||||| || ||||| || ||
Sbjct 286 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 227
Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328
||| ||| | ||||||||||||||||||||||||
Sbjct 226 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 191
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 947194439936
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |