Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= AAMG01002186.1 Length=328 Score E Sequences producing significant alignments: (Bits) Value seq8 109 1e-21 seq2 109 1e-21 >seq8 Length=1106993 Score = 109 bits (120), Expect = 1e-21 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Plus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172 ||||||||||||||||||||||||||||||| | |||| |||||||||||||| || | Sbjct 8768 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 8827 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || |||| | || | || ||||||| | | | ||| | ||| Sbjct 8828 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TGAAAACATTACGT 8880 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| || |||||||||||| || | |||||||||| || ||||| || || Sbjct 8881 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 8940 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||||||||||||||||||| Sbjct 8941 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 8976 >seq2 Length=3462877 Score = 109 bits (120), Expect = 1e-21 Identities = 157/216 (73%), Gaps = 8/216 (4%) Strand=Plus/Minus Query 114 GCAATAACAGGTCTGTGATGCCCTTAGATGTTCTGGGCCGCACGCGCGCTACACTG-ACA 172 ||||||||||||||||||||||||||||||| | |||| |||||||||||||| || | Sbjct 399 GCAATAACAGGTCTGTGATGCCCTTAGATGTCCGGGGCTGCACGCGCGCTACAATGTAGT 340 Query 173 GAGCCAACGAGTTCATCACCTTGGCCGGAAGGTCTGGGTAATCTTGTTAAACTCTGTCGT 232 || || |||| | || | || ||||||| | | | ||| | ||| Sbjct 339 GA-TCATTATGTTC--CTGTTTAGAGATAA---ATGGGTAAACAT-TGAAAACATTACGT 287 Query 233 GCTGGGGATAGAGCATTGCAATTATTGCTCTTCAACGAGGAATGCCTAGTAAGCGCGTGT 292 |||| || |||||||||||| || | |||||||||| || ||||| || || Sbjct 286 AACTGGGAGTGAAAATTGCAATTATTTTTCATGAACGAGGAATTCCAAGTAAACGTAAGT 227 Query 293 CATCAGCACGCGTTGATTACGTCCCTGCCCTTTGTA 328 ||| ||| | |||||||||||||||||||||||| Sbjct 226 CATTAGCTTACATTGATTACGTCCCTGCCCTTTGTA 191 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 947194439936