Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongyloides_20venezuelensis_20[genbank_20GCA_5F001028725.1_202015- 06-02] 587 sequences; 52,178,999 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq1 176 4e-39 seq233 140 3e-28 >seq1 Length=5851329 Score = 176 bits (194), Expect = 4e-39 Identities = 470/710 (66%), Gaps = 9/710 (1%) Strand=Plus/Plus Query 61207 GTGTTGGCGTTCTTTGCCGCTTCGGACGGTATCGTCAATGAGAATTTATTGGAACGTTTC 61266 || ||||| || ||||| || || || ||||| ||||| ||||||||| | ||| | ||| Sbjct 4933545 GTATTGGCCTTTTTTGCTGCATCAGATGGTATTGTCAACGAGAATTTAGTTGAAAGATTC 4933604 Query 61267 GCGCAGGAGGTGCAAGTGTCGGAGGCGCGTTGTTTCTACGGCTTCCAGATTGCCATGGAG 61326 | |||| || || || | ||||| || | ||||||||| ||||| ||||||||||| Sbjct 4933605 TCAAAGGAAGTTCAGGTCCCTGAGGCACGCTTTTTCTACGGTTTCCAAATTGCCATGGAA 4933664 Query 61327 AATGTCCACTCGGAGATGTACAGTGTTCTCATCGATACGTACATCAGGGAGCGGGCGGAA 61386 ||| | || || |||||| || || || || ||||| | || | || ||| Sbjct 4933665 AATATTCATAGTGAAATGTACTCAAAGCTTATTGAAACTTACATTCGTGATCAGGATGAA 4933724 Query 61387 CGTGA-ACGATTGTTCAATGCCATCGAGACGATACCGGCGGTGAAGCGGAAAGCGGATTG 61445 | | | | || |||||||| | || | || | | | |||||| ||||| Sbjct 4933725 AGGAATAAGCTT-TTCAATGCTTTGGATGAATTCCCATTCATCAGGAAGAAAGCTGATTG 4933783 Query 61446 GGCCTTCAATTGGATCACCAGTACAACGGCTACATTTGGTGAACGATTGCTGGCATTTGC 61505 ||| | | ||||| | || || ||||| ||||| ||||| | | || || || Sbjct 4933784 GGCTCTAAGATGGATTGCTGATAAAAATGCTACTTTTGGAGAACGCGTAATTGCTTTCGC 4933843 Query 61506 GGTGGTCGAGGGTGTATTTTTCAGTGGATCGTTTGCCGCAATCTTTTGGTTGAAGAAACG 61565 | || ||||| |||| ||| || || ||||| || || || ||| | ||||| || Sbjct 4933844 AGCTGTTGAGGGAATATTCTTCTCCGGTTCATTTGCTGCCATATTCTGGCTTAAGAAGCG 4933903 Query 61566 TGGACTTATGCCCGGTCTGACCTTCAGCAATGAGTTGATATCACGCGACGAGGGCATGCA 61625 || | ||||| || | || | |||||||| || || || || ||||| | || Sbjct 4933904 CGGCTTGATGCCTGGGTTAACACACTCAAATGAGTTAATTTCCCGAGATGAGGGGCTACA 4933963 Query 61626 TTGTGATTTTGC-TGTTTTGCTATTCAAACGCTATCTGGTGAATCGTCCGTCGGAGGAGC 61684 |||||||||| ||| || | | || |||| ||| ||| || || || || | Sbjct 4933964 CCGTGATTTTGCATGTCTTA-TGTACA---GCTACTTGGAGAACAAACCATCTGAAGAAC 4934019 Query 61685 GTGTGGGTGAGATTGTTCGTGAGGCGGTAACTATCGAACAGGAATTTCTGACTGACGCTT 61744 || | || || || || || || | ||| || |||||| ||| ||||| ||| Sbjct 4934020 GTATCAAAGAAATAATTAAAGATGCCGTTAGTATTGAGAAGGAATATCTTACTGATGCTC 4934079 Query 61745 TGCCCGTCTCACTCATCGGCATGAATTGTGGACTAATGTCGCAGTATATTGAATTTGTTG 61804 | || || | || || ||||| | || |||||| | ||||| |||| |||| Sbjct 4934080 TCCCTGTTGATATGATTGGAATGAACTCAGGTTTAATGTGTGATTATATCGAATACGTTG 4934139 Query 61805 CCGACCGTCTGTTGGTCGAT-TTGGGTATGAAGCGGATCTATAATACGAAAAACCCATTT 61863 |||| | |||||||| || || | | || | | |||||||| |||||||||||| Sbjct 4934140 CCGATCACCTGTTGGTAGAACTTAATTGTCAAAAGCTT-TATAATACTAAAAACCCATTT 4934198 Query 61864 GATTTCATGGACATGATTTCGCTGGATGGCAAGACGAATTTTTTCGAGAA 61913 ||||| |||| | | || | || || || || ||||| || ||||| Sbjct 4934199 GATTTTATGGTTAATCTCTCAATTGAAGGTAAAACCAATTTCTTTGAGAA 4934248 Score = 93.3 bits (102), Expect = 3e-14 Identities = 372/582 (64%), Gaps = 14/582 (2%) Strand=Plus/Minus Query 65993 ACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAGCGGTA 66052 ||||| || ||| |||| ||| | | || || ||||| | || | ||||| | | Sbjct 2654695 ACAAAATTATTAAGTGCAATAGACCCTAAATTACATACAGCAACTTCATTAGGAGAAGAA 2654636 Query 66053 TACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTTGATTA 66112 | | |||||||| | || ||||| || ||| || || ||||| ||||||||| Sbjct 2654635 AATTGAACAATTTCAGCACAAAGATTTGAACACTTTATTGTTCCTAAATTTTGTTGATTA 2654576 Query 66113 CTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTTGGGAC 66172 || || ||||| || |||||||| | ||| || ||| | || || || | || || Sbjct 2654575 CTTTTACGATTACAATGGTCCTTGTAAAGCATATATGGAATACCCGTTTCTATCTGAGAT 2654516 Query 66173 TCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCAC------CGTACGTACCGCCCTACCT 66226 ||| ||| ||||||| | | || || || | || || ||| | | | Sbjct 2654515 TCACAGATCTTCTGCCAAATATATCTGGCTTTTACTTGTTTCCTA--TAACGCTTTTCAT 2654458 Query 66227 TTGCGTTCGTAATGTTCGTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGACAT 66286 || || || ||| | || || | || || ||||| | || |||| Sbjct 2654457 TT----TCATATTGTACATAAAGTTTATCAAAATCATCACCAAAACAATCACCAAGACCC 2654402 Query 66287 GGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAAAT 66346 ||||| | | |||||||| | ||||||||| ||| ||| ||||| ||||||| Sbjct 2654401 GGACATTCATTAGGACACATTAACGACCAATCTGAATCGCTTTCAACACGTTTCATAAAT 2654342 Query 66347 AGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCC-GTG 66405 | ||| || | ||| || |||| || | ||| || |||| || || || || ||| Sbjct 2654341 AAATCTGGAACCCAAAGTCCGTAAAATAAATCACGCGCTCTTTCTTCTTCTGGTCCTGTG 2654282 Query 66406 ATTTTTGCGCAAGTCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGC 66465 ||||| || || || || | | || || ||||||||||| |||| || || || Sbjct 2654281 TTTTTTTTT-AACTCAAGAAATTGGATAATATCCGCATGCCATGGCTCCAAATATATAGC 2654223 Query 66466 GAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGAC 66525 || | ||| | ||| ||||||||||| || || ||| | | | ||| | || Sbjct 2654222 AAATGCGCCAGGTCTTTTATTACCACCTTGGTCAACATAACGAACAGTACTATTGTAAAC 2654163 Query 66526 ACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCC 66567 ||| |||||||| || | || || ||| ||||| || || Sbjct 2654162 ACGTAACATCGGAACCAAACCATTTGATGACCCATTAGTTCC 2654121 >seq233 Length=3140 Score = 140 bits (154), Expect = 3e-28 Identities = 669/1055 (63%), Gaps = 24/1055 (2%) Strand=Plus/Plus Query 65813 TCGGCCAGACCTTGAACTCCAATACCGATGGGACGATGACGCAAATTGGAACGTCTCGCC 65872 || |||| ||||||||| |||||||| || || || || | || ||| || | | || Sbjct 1572 TCTGCCAAACCTTGAACACCAATACCTATTGGTCGGTGTCTCATATTAGATTTTTTAGCT 1631 Query 65873 TCAGGTACAGGGTAGTAATTGATATCGATAATGCGATTCAAATTGCGTGTCACCACAT-- 65930 || || || ||||| ||||| | ||||||||| ||| ||||| | |||| | | Sbjct 1632 TCCGGAACTGGGTAATAATTCACATCGATAATCTTATTTAAATTCCTGGTCAAAATTTTA 1691 Query 65931 GCACGATACGTCGCAATTGTTCGAAATCAAAAT---GTTTAGGACGATCGGGAGTGCCGG 65987 ||| ||| || | | ||| ||||| ||| ||||| | || | | Sbjct 1692 GCAACATA-GTGG-AGTTGAGTGAAATTGAAAACAGGTTTACCATTCTCTGTAT------ 1743 Query 65988 ACACCACAAACTTGGGAAGGGCAAGAGATGCGAGGTTGCAGACAGCTATCTCGTCAGGAG 66047 | ||||| | ||| |||| ||| | || || || ||||| | || || || | Sbjct 1744 ---CAACAAATCTATTAAGAGCAATAGACCCTAGATTACATACAGCAACTTCATCTGGTG 1800 Query 66048 CGGTATACTCGACAATTTCGGTGCACAGATTACTGCAGCGTATGGTGCCCAAATTCTGTT 66107 ||| || ||||| || || || |||||| || || || || | ||| |||| Sbjct 1801 AACAATATTCAACAATCTCAGTACAGAGATTAGAACACTTGATAGTTCCAAGATTTTGTT 1860 Query 66108 GATTACTCTTGCGATTGCATGCATCCTTGTACATCATGTACGGAGTGCCGGTCTCAACTT 66167 ||||||| || ||||| || ||| || || | |||||| || ||||| || || | | Sbjct 1861 GATTACTTTTCCGATTACAATGATCTTTATAAACCATGTAAGGTGTGCCTGTTTCTATCT 1920 Query 66168 GGGACTCAATGATGGCGTGCCAAAGAGCGCGTGCCTTCACCGTACGTACCGCCCTACCTT 66227 || |||| || ||||||| | | | ||| || | | | | | | || || Sbjct 1921 GGCTCTCACAAATCTTTTGCCAAATAACTCTTGCTTTAATT-TGCTTTCTGTA--ACGTT 1977 Query 66228 TGCGTTCGTAATGTTC---GTAGAGGTGTTCGAAGGATTCACCCCATACTTCGGACAGAC 66284 | || | || || ||| | | ||||| |||||||| || || | Sbjct 1978 TCTCCTCCTCATATTTAATGTATAATTTCTCGAATTCATCACCCCAACAATCTTCAAGTC 2037 Query 66285 ATGGACACTTGTGTGGACACATCAGCGACCAATCACCATCCTGTTCTACACGACGCATAA 66344 ||||| | || |||||||| | |||||| | | ||| | || ||||| ||| | Sbjct 2038 CAGGACATTCATGAGGACACATTAACGACCAGTAAGAATCTTTCTCAACACGTTTCATGA 2097 Query 66345 ATAGATCAGGTATCCAGAGGGCGTAGAAGAGATCGCGTGCTCGTTGCTCCTCAATGCCGT 66404 ||| |||||| | ||| || | ||||| | ||| ||||||| || ||| || || | Sbjct 2098 ATAAATCAGGAACCCAAAGCCCATAGAACAAATCTCGTGCTCTTTCCTCTTCTGGACC-T 2156 Query 66405 GATTTTTGCGCAAG-TCGAGGAACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATG 66463 | || | | ||| || || || || | ||| || |||||||||||||| | || || Sbjct 2157 GTGTTCTTCTTAAGGTCCAGAAATTCCATGATATCAGCATGCCATGGTTCTAAATATATT 2216 Query 66464 GCGAACGAGCCCATACGTTTGCCGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAG 66523 || || | || | ||| ||||||||||| || || || || ||| || || Sbjct 2217 GCAAATGCTCCGGGCCTTTTATTACCACCTTGGTCAACATAACGTGCCGTATTATTAAAA 2276 Query 66524 ACACGCAACATCGGTACGAGCCCGTTAGATTTGCCATTGGTGCCGTCGATGGGGGATCCT 66583 || | |||||| || | | || || ||| | ||||| || || | || || || Sbjct 2277 ACTCTCAACATTGGAATTAATCCATTGGATGTCCCATTTGTCCCACCAATAAATGAACCA 2336 Query 66584 CGTGCCCGTATATCGTGAACATTCAGACCAATACCACCGGCCGTCTTCGAGATGGCAGCA 66643 |||| ||| |||||||| | ||| |||||||| || | |||||||| ||| Sbjct 2337 TTAGCCCTAATACAATGAACATTTAAACCGATACCACCTGCAGATTTCGAGATCAAAGCG 2396 Query 66644 CAATCGGCCACTGTCCGGAATATGCCGTCAATGGAGTCACCCTTGATGGTCAGGAGGTAG 66703 || | || ||| | | || || || || || ||||| || || || | | | Sbjct 2397 CATTGTTTCAGTGTGTCGTAAATTCCTTCTATAGAATCACCGGCCATTGTTAGCAAGAAA 2456 Query 66704 CATGAACTAAGTTGGGGTTTGGGTGTGGCGGCCGAGAAGAGGGTGGGTGTAGCGTGCGTA 66763 |||||| ||||||||| || | || || | || || | |||||| ||| Sbjct 2457 CATGAAGACAGTTGGGGTCGCCTAGTTCCCGCATTAAATAAAGTTGGGGAAGCGTGAGTA 2516 Query 66764 AAGTAATGGCGAGACATGTAATTGTACGTCTCGATGACAGCATCAATGTTTTCGCCATGA 66823 || | | ||||||| || | || ||||| || |||| | || | ||| || ||| Sbjct 2517 AACCACTTTTGAGACATATAGTCATAAGTCTCAATAACAGAACTTATATCTTCTCCGTGA 2576 Query 66824 ATCCCGAGTGCACATCGCATCAGGAGGTATTGAGG 66858 ||||| | ||| ||||||| | | |||||| Sbjct 2577 ATCCCAACCGCAACACGCATCAATAAATGTTGAGG 2611 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 397565155773680