Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= AAMG01000304.1 Length=683 Score E Sequences producing significant alignments: (Bits) Value seq36176 107 8e-21 seq492 96.9 1e-17 >seq36176 Length=2134 Score = 107 bits (118), Expect = 8e-21 Identities = 102/130 (78%), Gaps = 3/130 (2%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || | || |||||||||| ||||||||||||||| ||| |||| |||| Sbjct 217 AGAGCGTACAGGCTGCGACCCGAAAG---GTGAACTATGCCTGAGCAGGACGAAGTCAGA 161 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 ||||||| || |||| || || | | |||||| | |||||||| |||| | | |||||| Sbjct 160 GGAAACTTTGATGGAAGCCCGTATCAGTTCTGACATGCAAATCTATCGATAGACTTGGGT 101 Query 674 ATAGGGGCGA 683 |||||||||| Sbjct 100 ATAGGGGCGA 91 >seq492 Length=15264 Score = 96.9 bits (106), Expect = 1e-17 Identities = 96/123 (78%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 554 AGAGCATAGCTGTTGGGACCCGAAAGATGGTGAACTATGCCTGAATAGGGTGAAGCCAGA 613 ||||| || |||| ||||||||| |||||||||||||||||| | | |||| |||| Sbjct 5272 AGAGCGTACAGGTTGCGACCCGAAAAATGGTGAACTATGCCTGAGCAAGACGAAGTCAGA 5213 Query 614 GGAAACTCTGGTGGAGGCTCGCAGCGGTTCTGGCGTGCAAATCGATCGTCAAATTTGGGT 673 |||||||||| || | | ||| | || ||||| |||||| || ||||| | | |||||| Sbjct 5212 GGAAACTCTGATGAAAGTTCGTA-CGATTCTGACGTGCATATTGATCGATAGAGTTGGGT 5154 Query 674 ATA 676 || Sbjct 5153 TTA 5151 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 2076411200500