Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= AAMG01000750.1 Length=102 Score E Sequences producing significant alignments: (Bits) Value seq492 89.7 2e-16 seq106184 82.4 4e-14 seq123757 80.6 1e-13 >seq492 Length=15264 Score = 89.7 bits (98), Expect = 2e-16 Identities = 60/67 (90%), Gaps = 0/67 (0%) Strand=Plus/Minus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||||||||||| |||||||||| ||||||||||||||||| |||| ||| ||||| Sbjct 6001 GGAAAAGAAACTAACAAGGATTCCCTTAGTAACGGCGAGTGAACGGGGAGAAGCTCAGCG 5942 Query 61 CCGAATC 67 | ||||| Sbjct 5941 CTGAATC 5935 >seq106184 Length=856 Score = 82.4 bits (90), Expect = 4e-14 Identities = 61/71 (86%), Gaps = 4/71 (6%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGT----AACGGCGAGTGAACAGGGAAGAGCCC 56 ||||||||||||||| |||||||||| ||| |||||||||||||| |||| ||||| Sbjct 688 GGAAAAGAAACTAACAAGGATTCCCTTAGTTAGTAACGGCGAGTGAACGGGGAGAAGCCC 747 Query 57 AGCGCCGAATC 67 ||||| ||||| Sbjct 748 AGCGCTGAATC 758 >seq123757 Length=742 Score = 80.6 bits (88), Expect = 1e-13 Identities = 58/67 (87%), Gaps = 0/67 (0%) Strand=Plus/Plus Query 1 GGAAAAGAAACTAACCAGGATTCCCTCAGTAACGGCGAGTGAACAGGGAAGAGCCCAGCG 60 ||||||| ||||||| ||||||| || ||||||||||||||||| |||| ||||||||| Sbjct 9 GGAAAAGCAACTAACAAGGATTCTCTTAGTAACGGCGAGTGAACGGGGAGAAGCCCAGCG 68 Query 61 CCGAATC 67 | |||| Sbjct 69 CTAAATC 75 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 230038610400