Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= AAMG01000941.1 Length=299 Score E Sequences producing significant alignments: (Bits) Value seq76912 251 1e-64 seq69370 233 3e-59 seq492 210 4e-52 seq14316 194 3e-47 seq57425 181 2e-43 seq49298 161 2e-37 seq34009 114 2e-23 seq43495 104 4e-20 seq685 104 4e-20 seq8957 77.0 6e-12 seq290 75.2 2e-11 >seq76912 Length=1170 Score = 251 bits (278), Expect = 1e-64 Identities = 237/293 (81%), Gaps = 13/293 (4%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | |||| || | ||| |||| ||||||| ||||| |||| |||||| Sbjct 485 TACTAAGCTGGTTTACTATCGCAACGATTAGTCAACAGTAGGTTAAAATTAAC-TGTCTC 427 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | ||||||||||||||||| ||||||||| ||||||||| ||| || ||| || Sbjct 426 G---CAGTCTAAACCCAGCTCACCCTCCCTATTAATGGGTGAACTATCGAAAGCTCGGCG 370 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 ||||||||| | |||||||||||||||||||||||||||||||||||||||||||| | Sbjct 369 AATTCTGCTGCC--ATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCCA 312 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCC 239 || || |||||||| ||||||||||| ||||||||||||||||||||| ||||||| | Sbjct 311 TGGACACTTGGCTGTCACAAGCCAGTAATCCCTGTGGTAACTTTTCTGACACCTCTTACT 252 Query 240 TCAAATT-TCGAGGGACTA-AAGGATCGATAGGCCACACTTTCATGGTTTGTA 290 ||||| || ||| || |||| ||||||||||| |||| |||||||| Sbjct 251 AGAAATTATC--TGGATTAGAAGG--CGATAGGCCACGCTTTTGCGGTTTGTA 203 >seq69370 Length=1280 Score = 233 bits (258), Expect = 3e-59 Identities = 165/187 (88%), Gaps = 4/187 (2%) Strand=Plus/Plus Query 49 TAACCTGTCTCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCC 108 ||| |||||||| ||||||| ||||| |||||||| |||||||||||||| ||| | Sbjct 1091 TAATCTGTCTCACAACGGTCTGAACCCTTCTCACGTTGA-TATTAGTGGGTGAATAATTC 1149 Query 109 AACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAG 168 || |||| | |||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 1150 AAAGCTTGGCCAATTCTGCTTCG---TGATAGGAAGAGCCGACATCGAAGAATCAAAAAG 1206 Query 169 CAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGG 228 ||| ||||||||| ||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1207 CAATGTCGCTATGGACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGA 1266 Query 229 CACCTCT 235 ||||||| Sbjct 1267 CACCTCT 1273 >seq492 Length=15264 Score = 210 bits (232), Expect = 4e-52 Identities = 220/282 (78%), Gaps = 18/282 (6%) Strand=Plus/Plus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||| | ||||| | |||| |||||| ||||||||||||| |||| Sbjct 3357 TACTAAGCAGGATTCCTATTGGAAGAATTAGTCAACAGTAGCGTAAAACTAACCTTTCTC 3416 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 |||| | |||||| |||| ||||||||||||||||||||||||| ||||||| || Sbjct 3417 --GACGCTTTAAACCTAGCTA--GTTCCCTATTAGTGGGTGAACAATCTAACGCTTTGCG 3472 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTA 179 |||||||||| | |||||| |||| ||||||||||| ||||||||||||||||||| | Sbjct 3473 AATTCTGCTTGGCAATGATAACAAGATCCGACATCGAAAGATCAAAAAGCAACGTCGCGA 3532 Query 180 TGAACGCTTGGCTGCCACAAGCCAGTTA-TCCCTGTGGTAACTTTTCTGGCACCTCTAGC 238 || |||||||||||| | ||||| |||| |||||| ||||||||| || | | Sbjct 3533 TGGACGCTTGGCTGCGAAAAGCCCGTTATTCCCTG-----ACTTTTCTG--ACTTTCTTC 3585 Query 239 CTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTC 280 | |||| || ||| ||| ||||||||| ||| ||||| Sbjct 3586 CAAAAATATC--CGGATTAA---ATCGATAGGTCACGCTTTC 3622 >seq14316 Length=3821 Score = 194 bits (214), Expect = 3e-47 Identities = 149/173 (86%), Gaps = 4/173 (2%) Strand=Plus/Minus Query 123 TCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGA 182 ||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1907 TCTGCTTCGCAATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGG 1848 Query 183 ACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTCTAGCCTCA 242 ||| |||||| |||||||||| |||||||||||||||||| |||| ||||||| || | Sbjct 1847 ACGTTTGGCTTCCACAAGCCAATTATCCCTGTGGTAACTTCTCTGACACCTCTTACCAGA 1788 Query 243 AA-TTTCGAGGGACT-AAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 || | || ||| | |||||||||||||||||| ||||| ||| |||| || Sbjct 1787 AACTATC--TGGAGTAAAAGGATCGATAGGCCACGCTTTCGCGGTCTGTACTC 1737 Score = 181 bits (200), Expect = 2e-43 Identities = 134/155 (86%), Gaps = 1/155 (1%) Strand=Plus/Minus Query 1 TACTAAGCGGAATTACCATTGGGGCGACG-GTCATCAGTAGGGTAAAACTAACCTGTCTC 59 |||||||| | ||||| || | | | |||| ||||||||||||||||||||||||| Sbjct 2111 TACTAAGCAGGATTACTATCGCAACAATTAGTCAACAGTAGGGTAAAACTAACCTGTCTC 2052 Query 60 ATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCG 119 | || ||||||||||||||||||||||||||||||| ||||||||||||||||| || Sbjct 2051 ACGATCATCTAAACCCAGCTCACGTTCCCTATTAGTGGATGAACAATCCAACGCTTGGCG 1992 Query 120 AATTCTGCTTCGGTATGATAGGAAGAGCCGACATC 154 |||||||||||| ||||||||||||||||||||| Sbjct 1991 AATTCTGCTTCGCAATGATAGGAAGAGCCGACATC 1957 >seq57425 Length=1499 Score = 181 bits (200), Expect = 2e-43 Identities = 156/187 (83%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 96 GGGTGAACAATCCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCG 155 ||||||||||||||| ||| ||||| |||||||| ||||||||||| ||||| || Sbjct 6 GGGTGAACAATCCAATGCTCGGCGAAT-CTGCTTCGCAGTGATAGGAAGAACCGAC-TCA 63 Query 156 AAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTG 215 ||||||||||||||||| |||||||| ||||||| ||||||||| ||| ||||||||||| Sbjct 64 AAGGATCAAAAAGCAACTTCGCTATGGACGCTTGACTGCCACAAACCAATTATCCCTGTG 123 Query 216 GTAACTTTTCTGGCACCTC-TAGCCTCAAATTTCGAGGGACT-AAAGGATCGATAGGCCA 273 ||||||||||||||||||| || |||| || ||| | ||||| |||||| |||| Sbjct 124 GTAACTTTTCTGGCACCTCTTACTAGAAAATATC--TGGATTAAAAGGGTCGATATGCCA 181 Query 274 CACTTTC 280 | ||||| Sbjct 182 CGCTTTC 188 >seq49298 Length=1692 Score = 161 bits (178), Expect = 2e-37 Identities = 182/239 (76%), Gaps = 11/239 (5%) Strand=Plus/Minus Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 |||||||||||||| ||||| || |||||||||||||||||||||||||||||||| Sbjct 951 TCATGACGGTCTAA---CAGCTTACATTCCCTATTAGTGGGTGAACAATCCAACGCTTGG 895 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCC---GACATCGAAGGATCAAAAAGCAACGT 174 |||||| |||| | |||||| ||||| | |||| |||| ||||||||| |||| Sbjct 894 CGAATTTTGCTCTGCAATGATAAGAAGATACAGGGACACTGAAGCATCAAAAAG-AACGC 836 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCTC 234 | || | | |||| |||||| |||||| ||||||||||||||||||||||| || | Sbjct 835 TGTTA-GGAGGCTTAACTGCCAGAAGCCAATTATCCCTGTGGTAACTTTTCTGACA---C 780 Query 235 TAGCCTCAAATTTCGAGGGACTAAAGGATCGATAGGCCACACTTTCATGGTTTGTATTC 293 | || ||| | | | |||||||||||||||| ||||| |||| || || Sbjct 779 TTACCAAAAACTATCTGAATCAAAAGGATCGATAGGCCTAGCTTTCGCAGTTTTTACTC 721 >seq34009 Length=2232 Score = 114 bits (126), Expect = 2e-23 Identities = 118/152 (78%), Gaps = 7/152 (5%) Strand=Plus/Minus Query 58 TCATGACGGTCTAAACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTAC 117 |||||||||||||| ||||| || |||||||||||||| |||||||||||||||| Sbjct 804 TCATGACGGTCTAA---CAGCTTACACTCCCTATTAGTGGGCGAACAATCCAACGCTTGG 748 Query 118 CGAATTCTGCTTCGGTATGATAGGAAGAGCC---GACATCGAAGGATCAAAAAGCAACGT 174 ||||| |||| | |||||| |||||| | |||| ||| |||||||||||||| Sbjct 747 AGAATTTTGCTCTGCAATGATAAGAAGAGACAGTGACACTAAAGCATCAAAAAGCAACGC 688 Query 175 CGCTATGAACGCTTGGCTGCCACAAGCCAGTT 206 | || | | |||| |||||| |||||| || Sbjct 687 TGTTA-GGAGGCTTAACTGCCAGAAGCCAATT 657 >seq43495 Length=1866 Score = 104 bits (114), Expect = 4e-20 Identities = 65/70 (93%), Gaps = 0/70 (0%) Strand=Plus/Plus Query 107 CCAACGCTTACCGAATTCTGCTTCGGTATGATAGGAAGAGCCGACATCGAAGGATCAAAA 166 ||||||||| |||||||||||||| ||||||||||||||| ||||||||||||||||| Sbjct 1 CCAACGCTTGGCGAATTCTGCTTCGCAATGATAGGAAGAGCCAACATCGAAGGATCAAAA 60 Query 167 AGCAACGTCG 176 |||||||||| Sbjct 61 AGCAACGTCG 70 >seq685 Length=13306 Score = 104 bits (114), Expect = 4e-20 Identities = 82/96 (85%), Gaps = 2/96 (2%) Strand=Plus/Minus Query 139 AGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACA 198 || ||||||||| ||| ||| |||||||||| ||||||||||| || | |||||||||| Sbjct 3997 AGAAAGAGCCGAAATCAAAGAATCAAAAAGCTACGTCGCTATGGACTCGTGGCTGCCACT 3938 Query 199 -AGCCAGTTATCCCTGTGGTAACTTTTCTGGCACCT 233 ||| |||| |||||||| ||||||||||| ||||| Sbjct 3937 GAGCTAGTT-TCCCTGTGTTAACTTTTCTGACACCT 3903 >seq8957 Length=4899 Score = 77.0 bits (84), Expect = 6e-12 Identities = 95/125 (76%), Gaps = 10/125 (8%) Strand=Plus/Plus Query 162 CAAAAAGCAACGTCGCTATGAACGCTTGGCTGCCACAAGCCAGTTATCCCTGTGGTAACT 221 |||||||| |||||||| || || | |||||||||| ||| ||||||||| || ||||| Sbjct 2719 CAAAAAGCTACGTCGCTTTGGACTCGTGGCTGCCACGAGCTAGTTATCCCAATGTTAACT 2778 Query 222 TTTCTGGCACCTCTAGCCTCAAATTTCGAGGGAC-TAAAGGATCGATAGGCCACACTTTC 280 |||||| ||| |||| || | || ||| || | |||||||| || ||||||| Sbjct 2779 TTTCTGATACC-CTAG---AAACTATC---TGACTTAGAAGATCGATATGC--CACTTTC 2829 Query 281 ATGGT 285 |||| Sbjct 2830 GTGGT 2834 >seq290 Length=18389 Score = 75.2 bits (82), Expect = 2e-11 Identities = 91/123 (74%), Gaps = 1/123 (1%) Strand=Plus/Minus Query 71 AACCCAGCTCACGTTCCCTATTAGTGGGTGAACAATCCAACGCTTACCGAATTCTGCTTC 130 ||||| |||| ||| | | || ||| |||||| |||| ||||| | |||||| ||| Sbjct 10215 AACCCTGCTCGCGTATCTT-TTGGTGATTGAACAGTCCAGCGCTTGGCATATTCTGTTTC 10157 Query 131 GGTATGATAGGAAGAGCCGACATCGAAGGATCAAAAAGCAACGTCGCTATGAACGCTTGG 190 | ||||| ||||||||| | || ||| |||| |||| |||| || | |||||||| Sbjct 10156 GCAATGATGGGAAGAGCCAAAATAGAATGATCGAAAAACAACATCATCGTAGACGCTTGG 10097 Query 191 CTG 193 ||| Sbjct 10096 CTG 10094 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 852970503360