Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25] 167,310 sequences; 291,096,078 total letters Query= NC_010671.1 Length=124279 Score E Sequences producing significant alignments: (Bits) Value seq30843 89.7 4e-13 seq6785 84.2 2e-11 >seq30843 Length=2387 Score = 89.7 bits (98), Expect = 4e-13 Identities = 96/127 (76%), Gaps = 0/127 (0%) Strand=Plus/Minus Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||||||||| || ||||||||||| || || ||||||||||| | ||| |||||| Sbjct 1854 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 1795 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 |||||||| || |||||||| || |||||| | ||||| | ||| || || || | Sbjct 1794 TACCACCTTGATCAACGTAGCGGGCTGTGTTGTTGTACACACGAAGCATAGGAACCAGAC 1735 Query 66546 CGTTAGA 66552 | || || Sbjct 1734 CATTTGA 1728 >seq6785 Length=5584 Score = 84.2 bits (92), Expect = 2e-11 Identities = 102/139 (73%), Gaps = 0/139 (0%) Strand=Plus/Minus Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485 |||||||||| || ||||||||||| || || ||||||||||| | ||| |||||| Sbjct 5058 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 4999 Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545 ||||||||||| || ||||| || || ||| | ||||| | ||| || || | | Sbjct 4998 TTCCACCTTGGTCCACATAGCGTGCAGTGTTATTGTACACACGAAGCATAGGGACCAAAC 4939 Query 66546 CGTTAGATTTGCCATTGGT 66564 | || || | ||||| || Sbjct 4938 CATTTGAAGTACCATTAGT 4920 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 396757322818400