Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Strongylus_20vulgaris_20[genbank_20GCA_5F000951515.1_202014-09-25]
167,310 sequences; 291,096,078 total letters
Query= NC_010671.1
Length=124279
Score E
Sequences producing significant alignments: (Bits) Value
seq30843 89.7 4e-13
seq6785 84.2 2e-11
>seq30843
Length=2387
Score = 89.7 bits (98), Expect = 4e-13
Identities = 96/127 (76%), Gaps = 0/127 (0%)
Strand=Plus/Minus
Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485
|||||||||| || ||||||||||| || || ||||||||||| | ||| ||||||
Sbjct 1854 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 1795
Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545
|||||||| || |||||||| || |||||| | ||||| | ||| || || || |
Sbjct 1794 TACCACCTTGATCAACGTAGCGGGCTGTGTTGTTGTACACACGAAGCATAGGAACCAGAC 1735
Query 66546 CGTTAGA 66552
| || ||
Sbjct 1734 CATTTGA 1728
>seq6785
Length=5584
Score = 84.2 bits (92), Expect = 2e-11
Identities = 102/139 (73%), Gaps = 0/139 (0%)
Strand=Plus/Minus
Query 66426 ACTCAAAGATGTCGGCATGCCATGGTTCCAGGTAGATGGCGAACGAGCCCATACGTTTGC 66485
|||||||||| || ||||||||||| || || ||||||||||| | ||| ||||||
Sbjct 5058 ACTCAAAGATATCAGCATGCCATGGCTCAAGATAGATGGCGAAAGCTCCCGGGCGTTTGT 4999
Query 66486 CGCCACCTTGGTCGACGTAGCGAGCGACATTGTTGAAGACACGCAACATCGGTACGAGCC 66545
||||||||||| || ||||| || || ||| | ||||| | ||| || || | |
Sbjct 4998 TTCCACCTTGGTCCACATAGCGTGCAGTGTTATTGTACACACGAAGCATAGGGACCAAAC 4939
Query 66546 CGTTAGATTTGCCATTGGT 66564
| || || | ||||| ||
Sbjct 4938 CATTTGAAGTACCATTAGT 4920
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 396757322818400
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |