Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02]
15,010 sequences; 90,131,014 total letters
Query= AAMG01002199.1
Length=543
Score E
Sequences producing significant alignments: (Bits) Value
seq2663 333 9e-89
seq5755 293 8e-77
seq11478 286 1e-74
seq9799 284 4e-74
seq3970 127 7e-27
seq347 127 7e-27
seq15007 122 3e-25
seq12812 104 8e-20
>seq2663
Length=10768
Score = 333 bits (368), Expect = 9e-89
Identities = 299/372 (80%), Gaps = 14/372 (4%)
Strand=Plus/Plus
Query 50 AGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAA 109
||||||||||||||| |||| |||||||| ||||||||| |||||||||| |||||||
Sbjct 7558 AGGACACCTGCGTTACTGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAC 7617
Query 110 TGTCATCAACCCGGATCGGCCCGCGAAGGA--------CCTTAACGCCAGAAAATGGTCG 161
||||||| | ||||||| || | | || ||||||| ||| || |
Sbjct 7618 TGTCATCGGCGCGGATCGACCAACCACCGAGTGACCAGCCTTAACACCAAAATCAAGAAT 7677
Query 162 GTGAAGAC-CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220
| || || |||| || | ||||||||||| || |||| | |||||||||||||
Sbjct 7678 ATTGCTACTCAATTCCATTTTACTGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTC 7737
Query 221 ACTTGCG--CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277
||| || ||||| || ||||||||||| |||||||||||| | |||||||||||
Sbjct 7738 ACTGTCGGCCCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTC 7795
Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337
||||||||||||||||||||| |||||||||||||||| | | |||||||||||||
Sbjct 7796 AGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCT 7855
Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 7856 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 7915
Query 398 GCGCGTCACTAA 409
||||| | ||||
Sbjct 7916 GCGCGCCCCTAA 7927
>seq5755
Length=530
Score = 293 bits (324), Expect = 8e-77
Identities = 286/365 (78%), Gaps = 14/365 (4%)
Strand=Plus/Plus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| |
Sbjct 168 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 227
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||
Sbjct 228 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 287
Query 128 GCCCGCGAAGGA--------CCTTAACGCCAGAAAATGGTCGGTGAAGAC-CAGTTCCGC 178
|| | | || ||||||| ||| || | | || || |||||
Sbjct 288 ACCAACCACCGAGTGGCCAGCCTTAACACCAAAATCAAGAATATTGCTACTCAATTCCGT 347
Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAA-ACG 235
|| | |||||||||| || |||| | |||||||||||||||| || ||||| ||
Sbjct 348 TTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGCCCGAAGAC- 406
Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295
||||||||||| |||||||||||| | ||||||||||| |||||||||||||||||
Sbjct 407 -CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAGTCAAGCTCA 465
Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355
||||||||||||||||||||| | | ||||||||||||||||||||||||||||||||
Sbjct 466 ACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 525
Query 356 GATAG 360
|||||
Sbjct 526 GATAG 530
>seq11478
Length=5940
Score = 286 bits (316), Expect = 1e-74
Identities = 211/243 (87%), Gaps = 5/243 (2%)
Strand=Plus/Minus
Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227
|| ||||| || | |||||||||| || |||| | |||||||||||||||| ||
Sbjct 5877 CAATTCCGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGC 5818
Query 228 CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286
||||| || ||||||||||| |||||||||||| | ||||||||||| ||||||||
Sbjct 5817 CCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAG 5760
Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 5759 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTG 5700
Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 5699 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGCCCC 5640
Query 407 TAA 409
|||
Sbjct 5639 TAA 5637
>seq9799
Length=3475
Score = 284 bits (314), Expect = 4e-74
Identities = 210/242 (87%), Gaps = 5/242 (2%)
Strand=Plus/Minus
Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227
|| ||||| || | |||||||||| || |||| | |||||||||||||||| ||
Sbjct 3413 CAATTCCGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGC 3354
Query 228 CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286
||||| || ||||||||||| |||||||||||| | ||||||||||| ||||||||
Sbjct 3353 CCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAG 3296
Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346
|||||||||||||||||||||||||||||| | | |||||||||||||||||||||||
Sbjct 3295 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTG 3236
Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct 3235 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGCCCC 3176
Query 407 TA 408
||
Sbjct 3175 TA 3174
>seq3970
Length=725
Score = 127 bits (140), Expect = 7e-27
Identities = 102/123 (83%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| |
Sbjct 145 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 86
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||
Sbjct 85 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 26
Query 128 GCC 130
||
Sbjct 25 ACC 23
>seq347
Length=2538
Score = 127 bits (140), Expect = 7e-27
Identities = 102/123 (83%), Gaps = 0/123 (0%)
Strand=Plus/Minus
Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67
||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| |
Sbjct 2352 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 2293
Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127
||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | |||||||
Sbjct 2292 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 2233
Query 128 GCC 130
||
Sbjct 2232 ACC 2230
>seq15007
Length=1242
Score = 122 bits (134), Expect = 3e-25
Identities = 78/85 (92%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449
|| |||||||||| | ||||||| | ||||||||||||||||||||||||||||||||
Sbjct 101 CCTTTCATGCGCGCCCCTAATTAAGAGGCGAGGCATTTGGCTACCTTAAGAGAGTCATAG 42
Query 450 TTACTCCCGCCGTTTACCCGCGCTT 474
|||||||||||||||||||||||||
Sbjct 41 TTACTCCCGCCGTTTACCCGCGCTT 17
>seq12812
Length=20356
Score = 104 bits (114), Expect = 8e-20
Identities = 74/85 (87%), Gaps = 0/85 (0%)
Strand=Plus/Minus
Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105
||||||||||||||||||| |||| |||||||| ||||||||| |||||||||| ||||
Sbjct 20113 CCTTAGGACACCTGCGTTACTGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTG 20054
Query 106 ACAATGTCATCAACCCGGATCGGCC 130
||| ||||||| | ||||||| ||
Sbjct 20053 ACACTGTCATCGGCGCGGATCGACC 20029
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 1634954556480
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |