Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Subanguina_20moxae_20[genbank_20GCA_5F000981365.1_202015-04-02] 15,010 sequences; 90,131,014 total letters Query= AAMG01002199.1 Length=543 Score E Sequences producing significant alignments: (Bits) Value seq2663 333 9e-89 seq5755 293 8e-77 seq11478 286 1e-74 seq9799 284 4e-74 seq3970 127 7e-27 seq347 127 7e-27 seq15007 122 3e-25 seq12812 104 8e-20 >seq2663 Length=10768 Score = 333 bits (368), Expect = 9e-89 Identities = 299/372 (80%), Gaps = 14/372 (4%) Strand=Plus/Plus Query 50 AGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAA 109 ||||||||||||||| |||| |||||||| ||||||||| |||||||||| ||||||| Sbjct 7558 AGGACACCTGCGTTACTGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACAC 7617 Query 110 TGTCATCAACCCGGATCGGCCCGCGAAGGA--------CCTTAACGCCAGAAAATGGTCG 161 ||||||| | ||||||| || | | || ||||||| ||| || | Sbjct 7618 TGTCATCGGCGCGGATCGACCAACCACCGAGTGACCAGCCTTAACACCAAAATCAAGAAT 7677 Query 162 GTGAAGAC-CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTC 220 | || || |||| || | ||||||||||| || |||| | ||||||||||||| Sbjct 7678 ATTGCTACTCAATTCCATTTTACTGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTC 7737 Query 221 ACTTGCG--CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTC 277 ||| || ||||| || ||||||||||| |||||||||||| | ||||||||||| Sbjct 7738 ACTGTCGGCCCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTC 7795 Query 278 GGACTAGAGTCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCC 337 ||||||||||||||||||||| |||||||||||||||| | | ||||||||||||| Sbjct 7796 AGACTAGAGTCAAGCTCAACAGAGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCT 7855 Query 338 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 397 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 7856 TTGGCTGTGGTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCAT 7915 Query 398 GCGCGTCACTAA 409 ||||| | |||| Sbjct 7916 GCGCGCCCCTAA 7927 >seq5755 Length=530 Score = 293 bits (324), Expect = 8e-77 Identities = 286/365 (78%), Gaps = 14/365 (4%) Strand=Plus/Plus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 168 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 227 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | ||||||| Sbjct 228 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 287 Query 128 GCCCGCGAAGGA--------CCTTAACGCCAGAAAATGGTCGGTGAAGAC-CAGTTCCGC 178 || | | || ||||||| ||| || | | || || ||||| Sbjct 288 ACCAACCACCGAGTGGCCAGCCTTAACACCAAAATCAAGAATATTGCTACTCAATTCCGT 347 Query 179 TTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG--CCGAA-ACG 235 || | |||||||||| || |||| | |||||||||||||||| || ||||| || Sbjct 348 TTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGCCCGAAGAC- 406 Query 236 GCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAGTCAAGCTCA 295 ||||||||||| |||||||||||| | ||||||||||| ||||||||||||||||| Sbjct 407 -CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAGTCAAGCTCA 465 Query 296 ACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 355 ||||||||||||||||||||| | | |||||||||||||||||||||||||||||||| Sbjct 466 ACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTGGTTTCGCTA 525 Query 356 GATAG 360 ||||| Sbjct 526 GATAG 530 >seq11478 Length=5940 Score = 286 bits (316), Expect = 1e-74 Identities = 211/243 (87%), Gaps = 5/243 (2%) Strand=Plus/Minus Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227 || ||||| || | |||||||||| || |||| | |||||||||||||||| || Sbjct 5877 CAATTCCGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGC 5818 Query 228 CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 ||||| || ||||||||||| |||||||||||| | ||||||||||| |||||||| Sbjct 5817 CCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAG 5760 Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| Sbjct 5759 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTG 5700 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 5699 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGCCCC 5640 Query 407 TAA 409 ||| Sbjct 5639 TAA 5637 >seq9799 Length=3475 Score = 284 bits (314), Expect = 4e-74 Identities = 210/242 (87%), Gaps = 5/242 (2%) Strand=Plus/Minus Query 170 CAGTTCCGCTTCATTGATTAAGTaaaaaaaCGATAAGGGTAGTGGTATTTCACTTGCG-- 227 || ||||| || | |||||||||| || |||| | |||||||||||||||| || Sbjct 3413 CAATTCCGTTTTACCGATTAAGTAAGGAATCGATGAAAGTAGTGGTATTTCACTGTCGGC 3354 Query 228 CCGAA-ACGGCTCCCACTTATTCTACACCTCTCAAGTCATTTCACAAAGTCGGACTAGAG 286 ||||| || ||||||||||| |||||||||||| | ||||||||||| |||||||| Sbjct 3353 CCGAAGAC--CTCCCACTTATGCTACACCTCTCATGATTCTTCACAAAGTCAGACTAGAG 3296 Query 287 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTGATTCCGCCAAGCCCGTTCCCTTGGCTGTG 346 |||||||||||||||||||||||||||||| | | ||||||||||||||||||||||| Sbjct 3295 TCAAGCTCAACAGGGTCTTCTTTCCCCGCTAAGTTTACCAAGCCCGTTCCCTTGGCTGTG 3236 Query 347 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGTCAC 406 |||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | Sbjct 3235 GTTTCGCTAGATAGTAGATAGGGACAGTGGGAATCTCGTTAATCCATTCATGCGCGCCCC 3176 Query 407 TA 408 || Sbjct 3175 TA 3174 >seq3970 Length=725 Score = 127 bits (140), Expect = 7e-27 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 145 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 86 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | ||||||| Sbjct 85 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 26 Query 128 GCC 130 || Sbjct 25 ACC 23 >seq347 Length=2538 Score = 127 bits (140), Expect = 7e-27 Identities = 102/123 (83%), Gaps = 0/123 (0%) Strand=Plus/Minus Query 8 TTTTGCTCTACAGGAGATTTCTGTTCTCCATGAGTCCCCCTTAGGACACCTGCGTTATGG 67 ||||||||||| ||| |||| || ||| |||| | ||||||||||||||||||| | Sbjct 2352 TTTTGCTCTACGAGAGGTTTCCGTCCTCTCTGAGCTCGCCTTAGGACACCTGCGTTACTG 2293 Query 68 TTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTGACAATGTCATCAACCCGGATCG 127 ||| |||||||| ||||||||| |||||||||| ||||||| ||||||| | ||||||| Sbjct 2292 TTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTGACACTGTCATCGGCGCGGATCG 2233 Query 128 GCC 130 || Sbjct 2232 ACC 2230 >seq15007 Length=1242 Score = 122 bits (134), Expect = 3e-25 Identities = 78/85 (92%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 390 CCATTCATGCGCGTCACTAATTAGATGACGAGGCATTTGGCTACCTTAAGAGAGTCATAG 449 || |||||||||| | ||||||| | |||||||||||||||||||||||||||||||| Sbjct 101 CCTTTCATGCGCGCCCCTAATTAAGAGGCGAGGCATTTGGCTACCTTAAGAGAGTCATAG 42 Query 450 TTACTCCCGCCGTTTACCCGCGCTT 474 ||||||||||||||||||||||||| Sbjct 41 TTACTCCCGCCGTTTACCCGCGCTT 17 >seq12812 Length=20356 Score = 104 bits (114), Expect = 8e-20 Identities = 74/85 (87%), Gaps = 0/85 (0%) Strand=Plus/Minus Query 46 CCTTAGGACACCTGCGTTATGGTTTAACAGATGTGCCGCCCCAGCCAAACTCCCCACCTG 105 ||||||||||||||||||| |||| |||||||| ||||||||| |||||||||| |||| Sbjct 20113 CCTTAGGACACCTGCGTTACTGTTTGACAGATGTACCGCCCCAGTCAAACTCCCCGCCTG 20054 Query 106 ACAATGTCATCAACCCGGATCGGCC 130 ||| ||||||| | ||||||| || Sbjct 20053 ACACTGTCATCGGCGCGGATCGACC 20029 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1634954556480