Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000056.1 Length=332 Score E Sequences producing significant alignments: (Bits) Value seq3578 125 1e-26 >seq3578 Length=696 Score = 125 bits (138), Expect = 1e-26 Identities = 225/323 (70%), Gaps = 13/323 (4%) Strand=Plus/Plus Query 15 TGTTTAGCGGATTTTCTCGGCCGTCTGCTTACCCGCACTATTGGATTGTCCCGAAGGACG 74 || ||||||| ||||||||| | ||| ||||| |||||| ||||| || | || || Sbjct 211 TGCTTAGCGGGTTTTCTCGGGAGCCTGATTACCATCACTATCCGATTGGCCGG--GGCCG 268 Query 75 TTCCATACTGTCAA-TCTCGACTCTTTCCGTGGATTT----GCCTGCGGAAATCAACGTC 129 || ||||||| | || | | ||| | || ||| || || || | | Sbjct 269 CTCGGTACTGTCCCGTTTCATCATCGGCGGTGTACTTCACCGCC-GCCGATATAA----C 323 Query 130 TACACTCTTTAACCGGCTATTCCGTCAGCCGGCGGCGTTGTCACTCCTGCGTCCCCACGT 189 ||| | || ||| |||||||||||| |||| ||||||| || |||| || | | Sbjct 324 TACGCGGTTCAACGCACTATTCCGTCAGTGCGCGGATGTGTCACTTCTCCGTCGCCGCAT 383 Query 190 CACCCTCAAATGTAGTAACGGAATACTAACCGTTTCTGCCATCGGTCTCGCCGTTCGGCT 249 | | || | | || |||||| | |||| | |||||||| |||| | ||||| Sbjct 384 CGCTCTTACGTCGGGTGCCGGAATGTTGACCGGCTG-GCCATCGGGTGCGCCTTGCGGCT 442 Query 250 GAACCTTATGACCCGACTTACCCTGATCCGATTAGCGGTGATCAGGAAACCTTAGTCTTT 309 | ||||| | ||||||| | |||||||||||||||| |||||||||| |||| |||||| Sbjct 443 GCCCCTTAGGTCCCGACTGAACCTGATCCGATTAGCGTTGATCAGGAACCCTTGGTCTTT 502 Query 310 CGGCGAGGGGGTTTCCCACCCCC 332 ||||| ||| ||||| | | ||| Sbjct 503 CGGCGGGGGAGTTTCTCGCTCCC 525 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 959962761600