Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000185.1 Length=266 Score E Sequences producing significant alignments: (Bits) Value seq433 127 3e-27 seq197 86.0 9e-15 >seq433 Length=65655 Score = 127 bits (140), Expect = 3e-27 Identities = 171/229 (75%), Gaps = 7/229 (3%) Strand=Plus/Plus Query 1 GTACAAAGGGCAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTA-CTAGGAATTT 59 |||||||||||||||||||| |||||| ||||| |||||||| | | || ||||||||| Sbjct 42841 GTACAAAGGGCAGGGACGTAATCAACGAGAGCT-GATGACTCACACCTAACTAGGAATT- 42898 Query 60 CCTCGTTGAAGACCAACAATTGCAATGATCTATCCCCATCACGATGAAATTTCAAAGA-T 118 ||||||| ||| || ||||||||| | || || |||||| | | |||||| | | Sbjct 42899 CCTCGTTCAAGGGAAATAATTGCAATTCCCGATTCCAATCACGGAGGACTTTCAAGGGGT 42958 Query 119 TACCCGGACCTGTCGGCCAAGGTGATAGACTCGTTGAATACATCAGTGTAGCGCGCGTGC 178 | || ||| ||| | ||| | || | || || | | | ||||||| || ||| Sbjct 42959 TGCCAATCCCTTTCGAGAATGGTTACAG-CACGCTGCTTCCTCTAATGTAGCGTGCTTGC 43017 Query 179 GGCCCAGAACATCTAAGGGCATCACAGACCTGTTATTGCCTCAAACTTC 227 || | |||| |||||||||||||||||| | |||||| ||| |||||| Sbjct 43018 AGCACTGAACCTCTAAGGGCATCACAGACATATTATTG-CTC-AACTTC 43064 >seq197 Length=95797 Score = 86.0 bits (94), Expect = 9e-15 Identities = 73/86 (85%), Gaps = 3/86 (3%) Strand=Plus/Minus Query 1 GTACAAAGGG-CAGGGACGTAGTCAACGCGAGCTTGATGACTCGCGCTTACTAGGAATTT 59 |||||||||| |||||||||| |||||| |||| ||||||||| | ||||||||||| || Sbjct 32250 GTACAAAGGGGCAGGGACGTAATCAACGAGAGC-TGATGACTCACACTTACTAGGAA-TT 32193 Query 60 CCTCGTTGAAGACCAACAATTGCAAT 85 ||| ||| ||| || ||||||||| Sbjct 32192 CCTTGTTCAAGGGAAATAATTGCAAT 32167 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 751971741485