Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000383.1 Length=435 Score E Sequences producing significant alignments: (Bits) Value seq2930 300 4e-79 >seq2930 Length=1850 Score = 300 bits (332), Expect = 4e-79 Identities = 311/408 (76%), Gaps = 2/408 (0%) Strand=Plus/Plus Query 3 TACCTGAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGC 62 || || | ||||||||||||||||||| |||||||||||||||||||||||| ||||||| Sbjct 1002 TATCTAACGAATAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGC 1061 Query 63 AAGCGTTAATCGGAATTACTGGGCGTAAAGCGTGCGCAGGCGGTTGTGTAAGACAGGTGT 122 |||||||| ||||||| ||||||||||||| | ||| |||||| | ||| ||| ||| Sbjct 1062 AAGCGTTACTCGGAATCACTGGGCGTAAAGAGCGCGTAGGCGGGATAGCAAGTCAGATGT 1121 Query 123 GAAATCCCCGGGCTTAACCTGGGAATTGCATTTGTGACTGCACGACTAGAGTGTGTCAGA 182 ||||||| ||||||||| ||| |||||||| |||| ||||||| || ||| Sbjct 1122 GAAATCCTATGGCTTAACCATAGAACTGCATTTGAAACTGTTATTCTAGAGTATGGGAGA 1181 Query 183 GGGGGGTGGAATTCCACGTGTAGCAGTGAAATGCGTAGATATGTGGAGGAACACCAATGG 242 || |||||||||| |||||| || |||| |||||| || |||||| || || | Sbjct 1182 GGTAGGTGGAATTCTTGGTGTAGGGGTAAAATCCGTAGAGATCAAGAGGAATACTCATTG 1241 Query 243 CGAAGGCAGCCCCCTGGGATAACACTGACGCTCATGCACGAAAGCGTGGGGAGCAAACAG 302 ||||||| || || | | | ||||||||| |||| |||||||||||||||||||||| Sbjct 1242 CGAAGGCGACCTGCTAGAACATAACTGACGCTGATGCGCGAAAGCGTGGGGAGCAAACAG 1301 Query 303 GATTAGATACCCTGGTAGTCCACGCCCTAAACGATATCAACTAGTTGTTGGGGA-TTTAC 361 ||||||||||||||| ||||||||| |||||||||| ||| || Sbjct 1302 GATTAGATACCCTGG-NNNNNNNNNNCTAAACGATGAATGCTAGTTGTTGTGGAGCTTGT 1360 Query 362 TTCCTTGGTAACGTAGCTAACGCGTGAAGTTGACCGCCTGGGGAATAC 409 || |||| | ||||||||| | ||| ||||||||||| ||| Sbjct 1361 CTCTGCAGTAATGCAGCTAACGCATTAAGCATTCCGCCTGGGGAGTAC 1408 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1289549976416