Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000538.1 Length=248 Score E Sequences producing significant alignments: (Bits) Value seq3578 118 1e-24 seq3187 87.8 2e-15 >seq3578 Length=696 Score = 118 bits (130), Expect = 1e-24 Identities = 91/108 (84%), Gaps = 0/108 (0%) Strand=Plus/Plus Query 141 GGCACCCCTTCTCCCGAAGTTACGGGGCCATTTTGCCGAATTCCTTAACCACAGTTCACC 200 || ||||||| |||||||||||||||| || |||||| | ||||||||||| ||| | Sbjct 87 GGGACCCCTTATCCCGAAGTTACGGGGTCAATTTGCCTAGTTCCTTAACCATGATTCTCT 146 Query 201 CGAACGCCTTAGTATTCTCTACCTGACCACCTGTGTCGGTTTACGGTA 248 ||| ||||| ||||| |||||| |||||||||||||||||| ||||| Sbjct 147 CGAGCGCCTCAGTATGTTCTACCCGACCACCTGTGTCGGTTTGCGGTA 194 >seq3187 Length=1114 Score = 87.8 bits (96), Expect = 2e-15 Identities = 83/105 (79%), Gaps = 1/105 (1%) Strand=Plus/Plus Query 1 CTTATCCTTCCATCACCGGGCAGGCGTCAGTCCGTATACATCGACTTACCGTCTTCGCAC 60 |||| |||||| ||||||||||| ||||| | |||||| || ||| | | |||||||| Sbjct 979 CTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACCGCGCCTTGCGG-CTTCGCAC 1037 Query 61 GGACCTGTGTTTTTAGTAAACAGTCGCTTCCCTCTATTCTCTGCG 105 | ||||||||||| |||||||| || | |||||||||||| Sbjct 1038 AGCCCTGTGTTTTTGCTAAACAGTTGCCTGGACCTATTCTCTGCG 1082 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 694373905967