Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000567.1 Length=197 Score E Sequences producing significant alignments: (Bits) Value seq3578 210 2e-52 seq3187 102 9e-20 >seq3578 Length=696 Score = 210 bits (232), Expect = 2e-52 Identities = 153/175 (87%), Gaps = 3/175 (2%) Strand=Plus/Minus Query 22 CGCAAACGGACACACGTAGTCGGGTTGAATATACTAAGGCGCTTGAGTGAATCACGGTTA 81 ||||||| |||||| || ||||||| ||| ||||| ||||||| ||| |||||| ||||| Sbjct 191 CGCAAACCGACACAGGTGGTCGGGTAGAACATACTGAGGCGCTCGAGAGAATCATGGTTA 132 Query 82 AGGAACTAGGCAAACTGACCCTGTAACTTCGGGATAAAGGGTCCCTACCCAGAAATGGGA 141 |||||||||||||| |||||| ||||||||||||||| ||||||| | | | || || Sbjct 131 AGGAACTAGGCAAATTGACCCCGTAACTTCGGGATAAGGGGTCCCCATC--GTAA-GGTG 75 Query 142 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTGTGCCAA 196 |||||||||||||||||||||||||||||||||||||||||||||||| ||| || Sbjct 74 GGGCGCAGAGAATAGGTCCAGGCAACTGTTTAACAAAAACACAGGGCTATGCAAA 20 >seq3187 Length=1114 Score = 102 bits (112), Expect = 9e-20 Identities = 76/87 (87%), Gaps = 3/87 (3%) Strand=Plus/Minus Query 110 TCGGGATAAAGGGTCCCTACCCAGAAATGGGAGGGCGCAGAGAATAGGTCCAGGCAACTG 169 ||||||||| |||||| ||| | | |||||| ||||||||||||||||||||||||| Sbjct 1114 TCGGGATAAGGGGTCCT--CCCCGCATGGGGAGG-CGCAGAGAATAGGTCCAGGCAACTG 1058 Query 170 TTTAACAAAAACACAGGGCTGTGCCAA 196 |||| ||||||||||||||||||| || Sbjct 1057 TTTAGCAAAAACACAGGGCTGTGCGAA 1031 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 531180038666