Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000636.1 Length=426 Score E Sequences producing significant alignments: (Bits) Value seq3187 232 2e-58 seq3578 75.2 3e-11 >seq3187 Length=1114 Score = 232 bits (256), Expect = 2e-58 Identities = 218/278 (78%), Gaps = 0/278 (0%) Strand=Plus/Plus Query 2 GCGGATACACTGCATCTTCACAGCGATTTCAATTTCACTGAGTCTCGGGTGGAGACAGCG 61 |||| || | |||||||||| | | | ||||||||| |||| ||| ||||||| | Sbjct 787 GCGGGTAATCGGCATCTTCACCGATACTACAATTTCACCGAGTTCATGGTTGAGACAGTG 846 Query 62 CCGCCATCGTTACGCCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 121 | ||| |||| |||||||||||||||||||||||||||||||||||||||||||||| Sbjct 847 TCCGGATCATTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCT 906 Query 122 TAGGACCGTTATTGTTACGGCCGCCGTTTACCGGGGCTTCGATCAAGAGCTTCGCGTTAG 181 |||||||||||| ||||||||||||||||||||||||||| | | |||||| | Sbjct 907 TAGGACCGTTATAGTTACGGCCGCCGTTTACCGGGGCTTCACTTCACTGCTTCGATTGCT 966 Query 182 CTAACCCCATCAATTAACCTTCCGGCACCGGGCAGGCGTCACACCCTATACGTCCACTTT 241 || || | | ||||||||||||||||||||||| |||| | ||||| | ||| Sbjct 967 CTGACAGCTCCGCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACCGCGCCTTG 1026 Query 242 CGTGTTTGCAGAGTGCTGTGTTTTTAATAAACAGTCGC 279 || || ||| || |||||||||| |||||||| || Sbjct 1027 CGGCTTCGCACAGCCCTGTGTTTTTGCTAAACAGTTGC 1064 >seq3578 Length=696 Score = 75.2 bits (82), Expect = 3e-11 Identities = 67/84 (80%), Gaps = 0/84 (0%) Strand=Plus/Plus Query 343 CCTTCTCCCGAAGTTACGGTGCCTTTTTGCCTAGTTCCTTCCCCCGAGTTCTCTCAAGCG 402 |||| |||||||||||||| | | ||||||||||||||| || ||||||| |||| Sbjct 93 CCTTATCCCGAAGTTACGGGGTCAATTTGCCTAGTTCCTTAACCATGATTCTCTCGAGCG 152 Query 403 CCTTGGTATTCTCTACCCAACCAC 426 ||| |||| ||||||| ||||| Sbjct 153 CCTCAGTATGTTCTACCCGACCAC 176 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1260751093568