Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Syphacia_20muris_20[genbank_20GCA_5F000939275.1_202014-09-24] 3,879 sequences; 99,093,317 total letters Query= AAMG01000753.1 Length=364 Score E Sequences producing significant alignments: (Bits) Value seq3187 351 2e-94 seq3578 122 2e-25 >seq3187 Length=1114 Score = 351 bits (388), Expect = 2e-94 Identities = 250/287 (87%), Gaps = 0/287 (0%) Strand=Plus/Plus Query 5 CGGCATCTTCACCGGGATTACAATTTCACCGAGTCTATTGTTGAGACAGTGCCCAAATCG 64 |||||||||||||| | |||||||||||||||| || |||||||||||| || ||| Sbjct 796 CGGCATCTTCACCGATACTACAATTTCACCGAGTTCATGGTTGAGACAGTGTCCGGATCA 855 Query 65 TTACGCCTTTCGTGCGGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 124 |||| || ||||||| |||||||||||||||||||||||||||||||||||||||||||| Sbjct 856 TTACACCATTCGTGCAGGTCGGAACTTACCCGACAAGGAATTTCGCTACCTTAGGACCGT 915 Query 125 TATAGTTACGGCCGCCGTTTACTGGGGCTTAAGTTCACTGCTTCGATTGCTCTAACAGAT 184 |||||||||||||||||||||| ||||||| | |||||||||||||||||||| |||| | Sbjct 916 TATAGTTACGGCCGCCGTTTACCGGGGCTTCACTTCACTGCTTCGATTGCTCTGACAGCT 975 Query 185 CCCCTTAACCTTCCAGCACCGGGCAGGCGTCAGCTCCTATACATCGTCTTGCGACTTAGC 244 || ||||||||||| |||||||||||| ||||| ||||| || |||||| ||| || Sbjct 976 CCGCTTAACCTTCCGGCACCGGGCAGGTGTCAGGCTGTATACCGCGCCTTGCGGCTTCGC 1035 Query 245 AGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCTATTCTCTGCG 291 | | |||||||||||| |||||||| || ||| ||||||||||||| Sbjct 1036 ACAGCCCTGTGTTTTTGCTAAACAGTTGCCTGGACCTATTCTCTGCG 1082 >seq3578 Length=696 Score = 122 bits (134), Expect = 2e-25 Identities = 114/144 (79%), Gaps = 1/144 (1%) Strand=Plus/Plus Query 222 TATACATCGTCTTGCGACTTAGCAGAAACCTGTGTTTTTGGTAAACAGTCGCTTGGGCCT 281 ||| | ||||| | |||| ||| | |||||||||||| |||||||| || ||| ||| Sbjct 2 TATTCGTCGTCGTTAAACTTTGCATAGCCCTGTGTTTTTGTTAAACAGTTGCCTGGACCT 61 Query 282 ATTCTCTGCGGCCTGTCATA-GACAGGCACCCCTTCTCCCTAAGTTACGGGGTCATTTTG 340 |||||||||| || | || || || ||||||| |||| |||||||||||||| |||| Sbjct 62 ATTCTCTGCGCCCCACCTTACGATGGGGACCCCTTATCCCGAAGTTACGGGGTCAATTTG 121 Query 341 CCGAGTTCCTTAACAATAGTTCTC 364 || ||||||||||| || ||||| Sbjct 122 CCTAGTTCCTTAACCATGATTCTC 145 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 1062358789504